Factsheet for GSMUA_Achr10P00410_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01660_001	Banana	plastid	76.9	62.99
EES13002	Sorghum	mitochondrion, plastid	51.72	60.73
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	49.66	58.54
VIT_08s0056g00560.t01	Wine grape	plastid	58.62	48.43
CDY27990	Canola	plastid	53.1	47.98
Bra029704.1-P	Field mustard	plastid	52.76	47.66
CDY35990	Canola	plastid	52.76	47.52
KXG33587	Sorghum	plastid	55.86	47.23
PGSC0003DMT400016786	Potato	plastid	57.59	47.04
Zm00001d043119_P001	Maize	plastid	55.17	46.78
AT3G08640.1	Thale cress	plastid	54.14	46.59
Os01t0812900-01	Rice	plastid	55.86	46.55
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	54.83	46.36
Solyc09g031940.1.1	Tomato	plastid	56.9	46.22
AT3G08630.1	Thale cress	plastid	53.45	45.72
KRH09563	Soybean	plastid	50.34	45.62
Solyc10g074880.1.1	Tomato	plastid	56.21	45.4
GSMUA_Achr11P...	Banana	plastid	57.59	45.38
PGSC0003DMT400071250	Potato	plastid	56.9	45.33
KRH40643	Soybean	mitochondrion	54.48	45.27
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	54.14	44.99
CDY22156	Canola	plastid	52.76	44.87
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	54.48	44.76
CDY66586	Canola	plastid	52.76	44.74
KRH00511	Soybean	endoplasmic reticulum	53.45	44.67
TraesCS3D01G330200.1	Wheat	plastid	54.14	44.23
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	53.79	37.59
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	20.0	27.1
GSMUA_Achr8P08530_001	Banana	plastid	23.45	18.09
GSMUA_Achr7P14970_001	Banana	plastid	23.79	15.61
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	19.66	13.01
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	22.41	9.82
GSMUA_Achr6P35670_001	Banana	plastid	23.79	9.73
GSMUA_AchrUn_...	Banana	plastid	23.79	9.2

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00410_001	EnsemblPlants:GSMUA_Achr10T00410_001	EnsemblPlantsGene:GSMUA_Achr10G00410_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295E721	UniProt:M0RE68	MapMan:35.1	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G00410_001]

Coordinates

chr10:+:971711..974134

Molecular Weight (calculated)

31180.0 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.116

Length

290 amino acids

Sequence
(BLAST)

001: MQHLRSSSNN LAHTDLDHVG LTKTSTTSSP NNYFSGGDGA PGDDHHSEEP RSSDPGGPLG LFLEGWRSRV TADPQFPFKV LMEELVGVTA NVIGDMASRP
101: NFGLNELDFV FSTLVVGSIV NFVLIHMFQP GPYSLFSRLG TFLYKGATFA AVGFAAGLAG TAISNGLIAL RKRMDPAFET PNKPPPTVLN ALTWSLHLGL
201: SSNFRYQTLN GLEFLMEKTL PSAGFKASVV VLRCLNNVLG GMTFVMLARL TGSQKAGESE EENGEIKEKL VSHCVPVAED GDGESQRNES

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.