Factsheet for Solyc09g031940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016786	Potato	plastid	92.72	93.24
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	47.9	69.51
Solyc10g074880.1.1	Tomato	plastid	68.91	68.52
EES13002	Sorghum	mitochondrion, plastid	45.1	65.18
VIT_08s0056g00560.t01	Wine grape	plastid	61.34	62.39
Bra029704.1-P	Field mustard	plastid	54.62	60.75
CDY35990	Canola	plastid	54.62	60.56
AT3G08640.1	Thale cress	plastid	56.86	60.24
CDY27990	Canola	plastid	53.22	59.19
AT3G08630.1	Thale cress	plastid	56.02	59.0
KRH00511	Soybean	endoplasmic reticulum	57.14	58.79
KRH40643	Soybean	mitochondrion	57.42	58.74
Zm00001d043119_P001	Maize	plastid	56.02	58.48
CDY22156	Canola	plastid	55.46	58.06
Os01t0812900-01	Rice	plastid	56.58	58.05
CDY66586	Canola	plastid	54.9	57.31
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	46.22	56.9
KXG33587	Sorghum	plastid	54.06	56.27
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	54.06	56.27
TraesCS3D01G330200.1	Wheat	plastid	55.46	55.77
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	54.9	55.52
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	53.78	55.01
GSMUA_Achr8P01660_001	Banana	plastid	50.7	51.13
GSMUA_Achr11P...	Banana	plastid	51.26	49.73
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	55.46	47.71
Solyc01g087750.2.1	Tomato	nucleus, plastid	24.93	23.42
Solyc11g066740.1.1	Tomato	plastid	23.53	21.93
Solyc11g065490.1.1	Tomato	plastid	24.65	21.31
Solyc09g011340.2.1	Tomato	plastid	24.93	20.79
Solyc10g045620.1.1	Tomato	cytosol	14.29	15.04
Solyc01g104270.2.1	Tomato	plastid	19.05	12.98
Solyc06g050620.2.1	Tomato	mitochondrion	24.37	11.65
Solyc10g045630.1.1	Tomato	plastid	5.04	6.87

Protein Annotations

EnsemblPlants:Solyc09g031940.1.1	EnsemblPlantsGene:Solyc09g031940.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276C906
UniProt:K4CSP9	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr9:-:27293871..27294944

Molecular Weight (calculated)

37804.5 Da

IEP (calculated)

7.911

GRAVY (calculated)

0.150

Length

357 amino acids

Sequence
(BLAST)

001: MSAVVQLRCS SLPAHYHYQT LYFSAVKPSF SDNSCVRNLS FNPLTTSHVG SKQLLIKYQV PCAGWGGGDG GSIGIGGGGG GDGDSGDGGH SDDSLNSFGP
101: IGAFVNGWRS RVAADPQFPF KVLMEELVGV TSAVIGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYIL APTASVSSRA LPSIFASCPP SHMFEPGAYS
201: LFSRVGTLVY KGTLFAAVGF AAGLVGTAIS NGLIKIRNNM DPNFETPNKP PPTLLNAGTW ATHMGVSSNL RYQTLNGIEF LLDKALPPVV FKTSVVVLRC
301: LNNVLGGMSF VMLARLTGSQ SVDKGELVTV KDDGIKVEKE RLLNQSDNIQ TGHSVLK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.