Factsheet for Solyc09g011340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062339	Potato	mitochondrion	97.66	97.21
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	13.55	78.38
EES11134	Sorghum	plastid	58.18	62.72
Os04t0524400-01	Rice	plastid	57.01	61.15
TraesCS2B01G394800.1	Wheat	golgi, plastid	55.84	60.81
Solyc11g066740.1.1	Tomato	plastid	54.21	60.57
TraesCS2D01G374200.1	Wheat	plastid	55.14	60.05
TraesCS2A01G377800.1	Wheat	plastid	54.21	59.18
HORVU2Hr1G090260.1	Barley	plastid	55.37	58.09
Zm00001d002980_P001	Maize	plastid	54.21	58.0
Os03t0390900-01	Rice	plastid	20.33	41.83
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	54.67	35.35
Solyc09g031940.1.1	Tomato	plastid	20.79	24.93
Solyc01g087750.2.1	Tomato	nucleus, plastid	21.73	24.47
Solyc11g065490.1.1	Tomato	plastid	23.36	24.21
Solyc10g074880.1.1	Tomato	plastid	18.93	22.56
Solyc10g045620.1.1	Tomato	cytosol	14.72	18.58
Solyc01g104270.2.1	Tomato	plastid	18.93	15.46
Solyc06g050620.2.1	Tomato	mitochondrion	18.93	10.84
Solyc10g045630.1.1	Tomato	plastid	6.31	10.31

Protein Annotations

EnsemblPlants:Solyc09g011340.2.1	EnsemblPlantsGene:Solyc09g011340.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276B326
UniProt:K4CRG0	MapMan:35.1	:	:	:	:

Description

Protein RETICULATA, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G37860) UniProtKB/Swiss-Prot;Acc:B9DFK5]

Coordinates

chr9:+:4674684..4681714

Molecular Weight (calculated)

45840.2 Da

IEP (calculated)

7.732

GRAVY (calculated)

0.011

Length

428 amino acids

Sequence
(BLAST)

001: MAGCSSGIRS SQFTSLKNEI FIMGSIKDSN FTFVKRQDFV GMRKIGYLVC QENYKSRFLV KSSLNPEGKS ISGVSVETVL KENDTYSVGK DVSILDADNG
101: GDGEGDLAVG NGGNGKYPGG GGGGGGGGGG DNGEGDEEED EFGPLLKFED VMREAEARGA TLPADMIEAA KSVGIRKLLL LRYLDLQGSA LLGTAMRSCA
201: MLRNRMLADP SFLFKVGTEI VIDTTCATVA EVQKRGKDFW AEFELYAADM LVGVAVNVAL VGLLAPYARI GQPSVSQGFV GRFQRAYGAL PSSVFEAERP
301: GCRFSLNQRI AAYFYKGILY GFVGFGCGII GQGIANMIMT AKRSVKKSEH DVPVPPLVKS ALLWGVFLGV SSNTRLQIVT GLERLVESSP MGKQFPPVAM
401: AFTVGVRFAN NIYAGMQFVD WARWSGVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.