Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 10
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017452 | Potato | plastid | 97.11 | 97.11 |
| VIT_13s0064g00160.t01 | Wine grape | plastid | 63.95 | 63.95 |
| KRH23903 | Soybean | nucleus, plastid | 61.05 | 62.37 |
| KRH39906 | Soybean | mitochondrion, plastid | 61.58 | 62.23 |
| VIT_06s0004g02400.t01 | Wine grape | plastid | 62.63 | 61.98 |
| Solyc11g065490.1.1 | Tomato | plastid | 59.74 | 54.96 |
| KRG88973 | Soybean | plastid | 54.47 | 52.67 |
| Solyc10g074880.1.1 | Tomato | plastid | 23.95 | 25.35 |
| Solyc09g031940.1.1 | Tomato | plastid | 23.42 | 24.93 |
| Solyc11g066740.1.1 | Tomato | plastid | 25.0 | 24.8 |
| Solyc09g011340.2.1 | Tomato | plastid | 24.47 | 21.73 |
| Solyc01g104270.2.1 | Tomato | plastid | 22.63 | 16.41 |
| Solyc06g050620.2.1 | Tomato | mitochondrion | 32.11 | 16.33 |
| Solyc10g045620.1.1 | Tomato | cytosol | 14.47 | 16.22 |
| Solyc10g045630.1.1 | Tomato | plastid | 9.21 | 13.36 |
Protein Annotations
| EnsemblPlants:Solyc01g087750.2.1 | EnsemblPlantsGene:Solyc01g087750.2 | InterPro:RETICULATA-related | ncoils:Coil | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF8 |
| PFAM:PF11891 | SEG:seg | UniParc:UPI000276339D | UniProt:K4AYG5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1:-:82671716..82676297
Molecular Weight (calculated)
40865.2 Da
IEP (calculated)
8.868
GRAVY (calculated)
0.124
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIATATTT FYLSTTSFSR HQSSTFRFSS LTYPINFSTF SLNAQFHPPR TSFPIFSALS NHHGGGNIDG GGGGGGGGGG DGGGKDDENA GERNKKEAIM
101: ALAEAERTLE SLPKDLASAI EAGKIPPAVV HRFLELEKSP VLRWLLSFGG FRERLLADDL FLTKVAIECG IGIFTKSAAE LEKRRENFTK ELDFVCADVV
201: MAIVADFMLV WLPAPTVGLR PSLAIGSGPL TKLFYNCPDN AFQVVLSGTS YSFLQRLGAI VRNGAKLFAV GSGASLVGTG VTNTLINARK AIDKTFAGEA
301: ENLPVLSSSA AYGVYMAVSS NLRYQILAGV IEQRILEPLL HKNKIMLGAL CFVFRTGNTF LGSLMWVDFA RWIGIQRSRE
101: ALAEAERTLE SLPKDLASAI EAGKIPPAVV HRFLELEKSP VLRWLLSFGG FRERLLADDL FLTKVAIECG IGIFTKSAAE LEKRRENFTK ELDFVCADVV
201: MAIVADFMLV WLPAPTVGLR PSLAIGSGPL TKLFYNCPDN AFQVVLSGTS YSFLQRLGAI VRNGAKLFAV GSGASLVGTG VTNTLINARK AIDKTFAGEA
301: ENLPVLSSSA AYGVYMAVSS NLRYQILAGV IEQRILEPLL HKNKIMLGAL CFVFRTGNTF LGSLMWVDFA RWIGIQRSRE
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.