CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23903	Soybean	nucleus, plastid	60.81	64.25
KRH39906	Soybean	mitochondrion, plastid	61.32	64.1
VIT_13s0064g00160.t01	Wine grape	plastid	58.78	60.79
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	51.65	55.77
KRH29040	Soybean	endoplasmic reticulum	51.65	55.16
Solyc01g087750.2.1	Tomato	nucleus, plastid	52.67	54.47
PGSC0003DMT400017452	Potato	plastid	51.91	53.68
VIT_06s0004g02400.t01	Wine grape	plastid	52.42	53.65
KRH09563	Soybean	plastid	20.1	24.69
KRH00511	Soybean	endoplasmic reticulum	21.12	23.92
KRH40643	Soybean	mitochondrion	21.12	23.78
KRH26562	Soybean	plastid	23.16	23.7
KRH22744	Soybean	plastid	22.39	22.8
KRH00055	Soybean	plastid	24.68	21.8
KRH49190	Soybean	endoplasmic reticulum	23.66	20.99
KRG97671	Soybean	plastid	29.52	15.53
KRH33749	Soybean	plastid	11.2	15.44
KRH31203	Soybean	plastid	29.01	15.24
KRH44019	Soybean	mitochondrion, nucleus, plastid	19.08	14.45
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	18.58	13.96

Protein Annotations

EnsemblPlants:KRG88973	EnsemblPlantsGene:GLYMA_U017000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
ncoils:Coil	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8	PFAM:PF11891	ProteinID:KRG88973	ProteinID:KRG88973.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000233D6E2	UniProt:A0A0R0E481	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chrscaffold_21:-:2812826..2825000

Molecular Weight (calculated)

42552.8 Da

IEP (calculated)

9.358

GRAVY (calculated)

0.269

Length

393 amino acids

Sequence
(BLAST)

001: MALASFSNLS TQHLFSHYNH PSLQTCTITI PHGTLIFFPS KLKHCTFITS TAHFFPTTVT AISRVGPRIG PPLAISSAGD GGRSSGRGGG GESGGGGDEE
101: EEERDRNREE VMVALAEAGR SLESFPEDLA AAVTAGRVPG SIVRRLFQLE ESAVLGWLLK FGGFRERLLA DDLFLAKLLI ECVVIIFTKA AAELERRKEK
201: FTKELNFVVA NVVTGIVTGF VLVWFPAPTI SLKPPLAVSA GPIAKLFYGC PDNAFQVALP GTSYTLLQRI GAIVRNGAKL FVVGTGASLV GIGITNALIN
301: VQKAVNKTFT AEAENLPIIS TSVAFGVYMV VISNLRYQVL AGIIEQRILE PLLHRNKLIL TATYFTIRTA NTYWGSLLWV DFARWVGVQK IKD

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.