CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49190	Soybean	endoplasmic reticulum	91.69	92.1
CDY07766	Canola	plastid	60.9	65.46
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	52.36	65.45
CDY59488	Canola	plastid	61.12	64.92
CDX91387	Canola	plastid	61.35	64.39
Bra000024.1-P	Field mustard	plastid	61.35	64.08
CDX74930	Canola	plastid	60.9	64.07
Bra005154.1-P	Field mustard	plastid	60.9	64.07
KRH26562	Soybean	plastid	54.38	63.02
AT2G37860.4	Thale cress	plastid	61.12	62.96
KRH22744	Soybean	plastid	52.81	60.88
TraesCS2B01G261500.1	Wheat	golgi, unclear	55.73	57.94
EER98239	Sorghum	plastid	56.63	57.8
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	55.28	57.75
TraesCS2D01G241700.1	Wheat	golgi, unclear	55.28	57.48
Os07t0240300-01	Rice	plastid	56.4	56.66
Zm00001d019249_P002	Maize	mitochondrion, plastid	56.18	56.31
KRH33749	Soybean	plastid	24.04	37.54
KRH09563	Soybean	plastid	20.67	28.75
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	23.37	28.57
KRH23903	Soybean	nucleus, plastid	22.92	27.42
KRH29040	Soybean	endoplasmic reticulum	22.47	27.17
KRH39906	Soybean	mitochondrion, plastid	22.92	27.13
KRH00511	Soybean	endoplasmic reticulum	19.78	25.36
KRH40643	Soybean	mitochondrion	19.78	25.21
KRG88973	Soybean	plastid	21.8	24.68
KRH44019	Soybean	mitochondrion, nucleus, plastid	17.75	15.22
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	17.3	14.72
KRG97671	Soybean	plastid	18.2	10.84
KRH31203	Soybean	plastid	18.2	10.83

Protein Annotations

EMBL:ACUP02011370	EnsemblPlants:KRH00055	EnsemblPlantsGene:GLYMA_18G188800	EntrezGene:100783806	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	ProteinID:KRH00055
ProteinID:KRH00055.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002958492	UniProt:I1N2N4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr18:+:45542218..45546953

Molecular Weight (calculated)

47938.8 Da

IEP (calculated)

5.688

GRAVY (calculated)

0.016

Length

445 amino acids

Sequence
(BLAST)

001: MIMAGCSSNF AVAGCANVRK EIVLGNQKTN LIRLSFRGVL NEATFQVLRG SKCSRSCVPI QKKAMFFVMS MSQPSAEAEL ESAVSSIGLS EGGGDSVLRK
101: DQETRDSESD SKIDRDDDNG VVLDGSGGNG SFGSGGAGDG SGGGGSNDDG NDNEEEEFGP ILKYDEVMRE TEARGATLPL DMIEAAKSVG IRKVLLLRYL
201: DLQGSFWPLG FFMKSCSMLR NRMLADPAFL FKIGSEIVID TCCATFAEIQ KRGKDFWAEF ELYLADLLVG LVVNVALVGM LAPYARLGKP SISSGFLGRM
301: QKAYAALPSS VFEAERPGCR FSVQQRLGTY FYKGIMYGAV GFACGIIGQG IANMIMTAKR SIKKSEEDIP VPPLVKSAAL WGVFLAVSSN TRYQVVNGLE
401: RLVEASPMAK QVPPVALAFT VGVRFANNVY GGMQFVDWAR WSGVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.