Factsheet for TraesCS2A01G234300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G241700.1	Wheat	golgi, unclear	99.3	98.83
TraesCS2B01G261500.1	Wheat	golgi, unclear	97.65	97.2
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	78.4	93.82
Os07t0240300-01	Rice	plastid	80.28	77.2
EER98239	Sorghum	plastid	78.4	76.61
Zm00001d019249_P002	Maize	mitochondrion, plastid	77.93	74.77
VIT_08s0007g01250.t01	Wine grape	cytosol	54.46	62.2
CDX74930	Canola	plastid	55.63	56.03
CDY59488	Canola	plastid	54.93	55.85
CDX91387	Canola	plastid	55.4	55.66
Bra000024.1-P	Field mustard	plastid	55.4	55.4
Bra005154.1-P	Field mustard	plastid	54.93	55.32
CDY07766	Canola	plastid	53.76	55.31
KRH49190	Soybean	endoplasmic reticulum	57.51	55.3
KRH00055	Soybean	plastid	57.75	55.28
TraesCS2A01G377800.1	Wheat	plastid	50.23	54.59
AT2G37860.4	Thale cress	plastid	54.93	54.17
TraesCS1A01G242600.1	Wheat	plastid	21.6	23.96
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	19.48	23.51
TraesCS7A01G335500.1	Wheat	plastid	19.01	16.36
TraesCS5A01G110400.1	Wheat	plastid	19.25	15.38
TraesCS3A01G347800.1	Wheat	plastid	20.66	12.22
TraesCS1A01G298100.1	Wheat	plastid	20.89	12.16

Protein Annotations

MapMan:35.1	GO:GO:0000302	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009648	GO:GO:0009941	GO:GO:0016020	GO:GO:0048366	PFAM:PF11891	PANTHER:PTHR31038
PANTHER:PTHR31038:SF5	InterPro:RETICULATA-related	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G234300	EnsemblPlants:TraesCS2A01G234300.1	SEG:seg

Description

No Description!

Coordinates

chr2A:+:281735861..281756473

Molecular Weight (calculated)

44594.6 Da

IEP (calculated)

8.616

GRAVY (calculated)

0.067

Length

426 amino acids

Sequence
(BLAST)

001: MAFSCASVRL HGRVDTVKCR AVLARPSGCS YPTGRRRIAR GIRCQLPPQA SADGSAATTS GAAVVAREAG KVAGSAEDVG AVTQPTALQE KGAEVADVSG
101: SGGNGKFRPG GGGGGGGDSG GGGDGGDGHN EGDDEFGPIL SFEQVVQEVE KQGVSLSSLP ADMIEAAKSI GIQKLLLLRY LDMQASAWPL GPAIRSCGLL
201: RNRMLVDPVF LFKIGTEIVI DTCCATFAEV QKRGDEFWSE FELYAADMLV GVVVNVALVG MLAPYARFRG GSASAGILGR VRHAYDALPS SVFEAERPGY
301: SFSIRQRLGS YLLKGLLYGA VGFSCGLVGQ GIANLIMTAK RSVKKSENDV PVPPLLKTSA LWGVFLGVSS NTRYQVINGL ERLVEASPLG KRVPAASLAF
401: TVSVRFANNV YGGMQFVDWA RMSGCQ

Best Arabidopsis Sequence Match ( AT2G37860.1 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKR

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.