Factsheet for Bra005154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74930	Canola	plastid	96.69	96.69
Bra000024.1-P	Field mustard	plastid	85.58	84.98
VIT_08s0007g01250.t01	Wine grape	cytosol	61.47	69.71
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	52.48	62.36
KRH49190	Soybean	endoplasmic reticulum	65.01	62.08
KRH00055	Soybean	plastid	64.07	60.9
Bra002429.1-P	Field mustard	plastid	58.16	58.57
EER98239	Sorghum	plastid	57.68	55.96
Os07t0240300-01	Rice	plastid	58.39	55.76
TraesCS2B01G261500.1	Wheat	golgi, unclear	55.79	55.14
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	55.32	54.93
TraesCS2D01G241700.1	Wheat	golgi, unclear	55.56	54.91
Zm00001d019249_P002	Maize	mitochondrion, plastid	56.74	54.05
Bra006636.1-P	Field mustard	plastid	53.66	38.67
Bra008880.1-P	Field mustard	cytosol	19.39	29.18
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	15.84	27.24
Bra006164.1-P	Field mustard	plastid	23.64	26.45
Bra029704.1-P	Field mustard	plastid	19.86	26.17
Bra036522.1-P	Field mustard	plastid	19.62	15.96
Bra009789.1-P	Field mustard	plastid	19.86	15.88
Bra017008.1-P	Field mustard	plastid	23.64	13.46
Bra003229.1-P	Field mustard	plastid	21.75	12.42

Protein Annotations

EnsemblPlants:Bra005154.1	EnsemblPlants:Bra005154.1-P	EnsemblPlantsGene:Bra005154	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025478B1	UniProt:M4CLR7	MapMan:35.1	:	:	:

Description

AT2G37860 (E=4e-167) LCD1 | LCD1 (LOWER CELL DENSITY 1)

Coordinates

chrA05:-:3744467..3746112

Molecular Weight (calculated)

45154.4 Da

IEP (calculated)

7.034

GRAVY (calculated)

0.040

Length

423 amino acids

Sequence
(BLAST)

001: MAGCAMNCQF SSAVKLRNDV ASLRIRSRDF AFGGSVKELK VPVLRINKKQ RSRLLMVNMS HSNVEPLSSV ADSTEPTEEE GGSILGKGDN AGSLGTDEPA
101: KLVSDGGGGG GGNGGLNNGG GGGGDDGGED YEEKEFGPLL KFEEVMRETE ARGATLPSDM LEAAKTFGIR KLILLRYLDL QSSAGLLGFA IRSWSMLRNR
201: MLADPSFLFK IGTEIVIDSC CATVAEVQKR GKDFWAEFEL YVADLLVGVV VNVALVGMLA PFVRFGQPSA SSGFLGPMLN AYNALPSSVF EAERPGCSFS
301: AQQRLATYFY KGIMYGAVGF GCGIVGQGIA NLIMTAKRSI NKSEEDIPVP PLIKSAALWG VFLSVSSNTR YQIINGLERV VEASPFAKKV PPVALAFTVG
401: VRFANNIYGG MQFVDWARLS GCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.