Factsheet for Zm00001d019249_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98239	Sorghum	plastid	88.74	90.37
Os07t0240300-01	Rice	plastid	81.31	81.49
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	64.86	80.9
TraesCS2B01G261500.1	Wheat	golgi, unclear	76.35	79.21
TraesCS2D01G241700.1	Wheat	golgi, unclear	75.45	78.27
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	74.77	77.93
VIT_08s0007g01250.t01	Wine grape	cytosol	55.18	65.68
CDY59488	Canola	plastid	54.05	57.28
CDX91387	Canola	plastid	54.5	57.08
CDY07766	Canola	plastid	52.93	56.76
Bra005154.1-P	Field mustard	plastid	54.05	56.74
KRH49190	Soybean	endoplasmic reticulum	56.31	56.43
KRH00055	Soybean	plastid	56.31	56.18
Bra000024.1-P	Field mustard	plastid	53.83	56.1
CDX74930	Canola	plastid	53.38	56.03
Zm00001d002980_P001	Maize	plastid	49.55	55.0
AT2G37860.4	Thale cress	plastid	53.15	54.63
Zm00001d042050_P001	Maize	plastid	22.75	24.34
Zm00001d038085_P001	Maize	plastid	20.72	23.77
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	18.02	23.32
Zm00001d043119_P001	Maize	plastid	17.79	23.1
Zm00001d041036_P001	Maize	cytosol	13.96	18.02
Zm00001d023791_P002	Maize	plasma membrane	18.47	15.27
Zm00001d010606_P004	Maize	plastid	17.12	11.82
Zm00001d043023_P002	Maize	plastid	18.69	11.25

Protein Annotations

EntrezGene:103648205	MapMan:35.1	UniProt:A0A1D6HWD3	GO:GO:0000302	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009648	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
GO:GO:0048366	ProteinID:ONM52540.1	ProteinID:ONM52543.1	PFAM:PF11891	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5
InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI0008449E80	EnsemblPlantsGene:Zm00001d019249	EnsemblPlants:Zm00001d019249_P002	EnsemblPlants:Zm00001d019249_T002
SEG:seg	:	:	:	:	:

Description

Protein RETICULATA chloroplastic

Coordinates

chr7:+:23916897..23921175

Molecular Weight (calculated)

46939.3 Da

IEP (calculated)

5.584

GRAVY (calculated)

0.071

Length

444 amino acids

Sequence
(BLAST)

001: MSMAFSCAGA RLHGRTGVGG AKCRPGAALL GRRGTCFRPT AWRWSTARGI RADLPPPPRA SADGAATSGP DVVVPEAGDA TEEVAAVVQP VVLPEKLDVD
101: DGGNGKLPPA AGGGGDGENG GGSGGGGDGD EEEDEFGPIL SFDQVVQEAE KRGVSLPSLP TDIVEAAKSV GIQKLLLLRY LDMQASAWPL GPAIRSCSLL
201: RNRMLVDPAF LFKIGTEIVI DTCCATFAEV QKRGEEFWSE FELYAADMLV GVVVNVALVG MLAPYARFGS RSASEGLLGR VRHAYDALPS SVFEAERPGY
301: KFSVQQRIGT YFFKGILYGS VGFFCGLVGQ GIANLIMTAK RGPISDFLVS VGIIAYFDRS VKKSDDDVPV PPLLKTSALW GAFLAVSSNT RYQIINGLER
401: LVEASPVGKR VPAASLAFTV GVRFANNVYG GMQFVDWARM SGCQ

Best Arabidopsis Sequence Match ( AT2G37860.1 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKR

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.