Factsheet for Zm00001d043023_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03820	Sorghum	mitochondrion	93.09	93.6
HORVU5Hr1G020100.2	Barley	cytosol	27.64	86.81
TraesCS3D01G341400.1	Wheat	plastid	80.22	82.22
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	80.22	82.11
TraesCS3A01G347800.1	Wheat	plastid	79.54	81.53
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	79.13	79.78
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	79.95	78.98
Zm00001d010606_P004	Maize	plastid	62.06	71.23
GSMUA_Achr6P35670_001	Banana	plastid	64.77	67.42
GSMUA_AchrUn_...	Banana	plastid	68.29	67.2
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	61.25	60.35
AT3G56140.1	Thale cress	plastid	59.76	59.19
KRG97671	Soybean	plastid	59.62	58.9
PGSC0003DMT400061517	Potato	mitochondrion	59.62	58.9
Solyc06g050620.2.1	Tomato	mitochondrion	59.62	58.9
KRH31203	Soybean	plastid	59.49	58.69
CDX67635	Canola	plastid	59.08	58.68
Bra003229.1-P	Field mustard	plastid	58.81	58.57
CDY31998	Canola	plastid	58.94	58.55
AT2G40400.1	Thale cress	plastid	58.13	58.37
CDX93185	Canola	plastid	57.45	57.61
Bra017008.1-P	Field mustard	plastid	57.32	56.93
CDY52926	Canola	plastid	57.18	56.8
Zm00001d038085_P001	Maize	plastid	17.21	32.82
Zm00001d042050_P001	Maize	plastid	16.4	29.16
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	11.25	24.2
Zm00001d043119_P001	Maize	plastid	11.11	23.98
Zm00001d002980_P001	Maize	plastid	12.47	23.0
Zm00001d023791_P002	Maize	plasma membrane	14.09	19.37
Zm00001d041036_P001	Maize	cytosol	8.94	19.19
Zm00001d019249_P002	Maize	mitochondrion, plastid	11.25	18.69

Protein Annotations

EnsemblPlants:Zm00001d043023_P002	EnsemblPlants:Zm00001d043023_T002	EnsemblPlantsGene:Zm00001d043023	EntrezGene:100191628	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF6	PFAM:PF04187	PFAM:PF11891	ProteinID:ONM36743.1
SEG:seg	SUPFAM:SSF159501	UniParc:UPI000221243A	UniProt:A0A1D6N831	MapMan:35.1	:

Description

Protein RETICULATA-RELATED 6 chloroplastic

Coordinates

chr3:+:186815795..186820960

Molecular Weight (calculated)

80129.1 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.135

Length

738 amino acids

Sequence
(BLAST)

001: MLPHAPSRTS GALRFKPHLP TKPPLLTSSS TATPASASAS TRGRLCAAAA AAATRRDLLV LVPSLVAAST VLQSLPLAAS AAAGDDKPAP PTPAQAQAPA
101: SPASPPPPPP ADEPALSRVY DATVIGEPQA VGKEARRRVW EKLIAARVVY LGESELVPDR DDRVLELEIV RKLAAGCAEA GRSISLALEA FPCDLQEQLN
201: RFMDGRIDGN TLRLYTSHWA PERWQEYEPL LNYCRDNGIK LVACGTPLEV VRTVQAEGIR SLSKAQRKLY APPAGSGFVS GFTSISGRSL IDKISSTRGS
301: PFGPSSYLSA QARVVDDYTM SQTIMKEISN GDPSGMLVVV TGASHVMYGP RGIGVPARIS KKMQKKNQVV ILLDPERQSI RREGEIPVAD FLWYSAAKPC
401: SRNCFDRAEI ARVMNAAGRR REALPQDLQK GIDLGVVSPE ILQNFFDLEK YPVMAELIHR FQGFRERLLA DPKFLNRLAI EEAISITTTL LAQYEKRKGR
501: FFEEIDYVLT DTIRGSVVDF FTVWLPAPTI SLLSFADDGS GESVELLKGI LGSLPDNAFQ KGIVGQNWNI NQRFASVLMG GLKLAGVGFI SSIGAGVASD
601: VLYGARRILK PSANMEVGRK RSPIWKSAAV YSCFLGTSAN LRYQVIAGLI EHRLGENLMA YYDQPLIANL LSFVSRTVNS YWGTQQWIDL ARVTGVQRTN
701: KELPSPEVSS ASEMPLLECG TAEVQNADDS SNQSNDLT

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.