CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043023_P002	Maize	plastid	93.6	93.09
HORVU5Hr1G020100.2	Barley	cytosol	27.93	87.23
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	80.52	81.97
TraesCS3D01G341400.1	Wheat	plastid	80.25	81.81
TraesCS3A01G347800.1	Wheat	plastid	79.97	81.53
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	81.74	80.32
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	79.16	79.37
GSMUA_Achr6P35670_001	Banana	plastid	65.8	68.12
GSMUA_AchrUn_...	Banana	plastid	68.39	66.93
KXG22205	Sorghum	plastid	67.44	66.71
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	61.85	60.61
PGSC0003DMT400061517	Potato	mitochondrion	60.63	59.57
Solyc06g050620.2.1	Tomato	mitochondrion	60.49	59.44
AT3G56140.1	Thale cress	plastid	60.08	59.19
KRG97671	Soybean	plastid	59.95	58.9
Bra003229.1-P	Field mustard	plastid	59.4	58.84
CDX67635	Canola	plastid	59.54	58.82
KRH31203	Soybean	plastid	59.81	58.69
CDY31998	Canola	plastid	59.26	58.55
AT2G40400.1	Thale cress	plastid	58.45	58.37
CDX93185	Canola	plastid	57.9	57.74
Bra017008.1-P	Field mustard	plastid	57.77	57.07
CDY52926	Canola	plastid	57.63	56.93
EES18163	Sorghum	plastid	18.12	32.2
KXG34151	Sorghum	plastid	17.3	30.38
EES13002	Sorghum	mitochondrion, plastid	9.13	27.13
KXG33587	Sorghum	plastid	11.72	25.07
EES11134	Sorghum	plastid	12.67	23.43
EES16982	Sorghum	plastid	14.71	20.07
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	1.91	18.92
EER98239	Sorghum	plastid	11.17	18.81

Protein Annotations

EnsemblPlants:EES03820	EnsemblPlantsGene:SORBI_3003G341300	EntrezGene:8085412	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF6	PFAM:PF04187	PFAM:PF11891	ProteinID:EES03820	ProteinID:EES03820.1
RefSeq:XP_002458700.1	SEG:seg	SUPFAM:SSF159501	unigene:Sbi.3249	UniParc:UPI0001A85866	UniProt:C5XNW7
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:66407855..66413652

Molecular Weight (calculated)

79819.0 Da

IEP (calculated)

8.559

GRAVY (calculated)

-0.128

Length

734 amino acids

Sequence
(BLAST)

001: MLPHAPCRTL GAFRCKPHLP TKPPLLTSTP TSASTRGRLC ATAAAAATRR GLLVLVPSLV AASTVLQSLP LAASAAAGDD KPSPPPPAQA QAAPAAPASP
101: PPPPPAEEPA LSRVYDATVI GEPQAVGKDA RRRVWEKLMA ARVVYLGEAE LVPDRDDRVL ELEIVRKLAA GCAEAGRSIS LALEAFPCDL QEQLNQFMDG
201: RIDGNSLRLY TSHWAPERWQ EYEPILNYCR DNGIKLVACG TPLEVVRTVQ AEGIRSLSKA QRKLYAPPAG SGFISGFTSI SGRSLIDKIS SNRGSPFGPS
301: SYLSAQARVV DDYTMSQTIM KEITNGDPSG MLVVVTGASH VMYGSRGIGV PARISKKMQK KKQVVILLDP ERQSIRREGE IPVADFLWYS AAKPCSRNCF
401: DRAEIARVMN AAGRRREALP QDLQKGIDLG VVSPEILQNF FDLEKYPVMA ELIHRFQGFR ERLLADPKFL HRLAIEEGIS ITTTLLAQYE KRKGRFFEEI
501: DYVLTDTIRG SVVDFFTVWL PAPTISLLSF ADDGSGESVE LLKGILGSVP DNAFQKGIVG QNWNINQRFA SVLMGGLKLA GVGFISSIGA GVASDVLYGA
601: RQILKPSASM EVARKRTPIW KAATVYSCFL GTSANLRYQV IAGLIEHRLG EDLMTYYNQP LLASLVSFVS RTVNSYWGTQ QWIDLARATG VQSTKKELPS
701: PEVSSATEMP LLECGTTEVQ KVDDSSNNQS NDLT

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.