CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31203	Soybean	plastid	94.91	94.79
HORVU5Hr1G020100.2	Barley	cytosol	22.49	71.49
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	71.35	71.16
PGSC0003DMT400061517	Potato	mitochondrion	66.13	66.13
Solyc06g050620.2.1	Tomato	mitochondrion	65.6	65.6
GSMUA_Achr6P35670_001	Banana	plastid	61.31	64.6
AT3G56140.1	Thale cress	plastid	63.86	64.03
Bra003229.1-P	Field mustard	plastid	63.32	63.83
CDX67635	Canola	plastid	63.45	63.8
CDY31998	Canola	plastid	63.05	63.39
AT2G40400.1	Thale cress	plastid	62.25	63.27
CDX93185	Canola	plastid	61.18	62.09
CDY52926	Canola	plastid	61.31	61.64
Bra017008.1-P	Field mustard	plastid	61.04	61.37
GSMUA_AchrUn_...	Banana	plastid	61.45	61.2
TraesCS3A01G347800.1	Wheat	plastid	58.37	60.56
TraesCS3D01G341400.1	Wheat	plastid	58.23	60.42
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	58.1	60.19
EES03820	Sorghum	mitochondrion	58.9	59.95
Zm00001d043023_P002	Maize	plastid	58.9	59.62
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	58.23	58.23
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	57.03	58.2
Zm00001d010606_P004	Maize	plastid	48.73	56.61
TraesCS1A01G298100.1	Wheat	plastid	54.89	56.01
TraesCS1D01G293100.1	Wheat	plastid	55.15	55.9
TraesCS1B01G307600.1	Wheat	plastid	54.75	55.57
KXG22205	Sorghum	plastid	53.15	53.5
HORVU1Hr1G070330.11	Barley	cytosol	54.89	34.17
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	16.06	32.97
KRH29040	Soybean	endoplasmic reticulum	16.2	32.88
KRH39906	Soybean	mitochondrion, plastid	16.47	32.71
KRH23903	Soybean	nucleus, plastid	16.2	32.53
KRG88973	Soybean	plastid	15.53	29.52
KRH40643	Soybean	mitochondrion	11.78	25.21
KRH09563	Soybean	plastid	10.71	25.0
KRH00511	Soybean	endoplasmic reticulum	11.51	24.78
KRH26562	Soybean	plastid	11.51	22.4
KRH22744	Soybean	plastid	11.11	21.5
KRH44019	Soybean	mitochondrion, nucleus, plastid	13.79	19.85
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	13.65	19.5
KRH00055	Soybean	plastid	10.84	18.2
KRH49190	Soybean	endoplasmic reticulum	10.71	18.06
KRH33749	Soybean	plastid	6.43	16.84

Protein Annotations

EMBL:ACUP02010805	EnsemblPlants:KRG97671	EnsemblPlantsGene:GLYMA_18G023200	EntrezGene:100790538	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	ProteinID:KRG97671
ProteinID:KRG97671.1	SEG:seg	SUPFAM:SSF159501	UniParc:UPI000233F113	UniProt:I1MYY6	MapMan:35.1

Description

hypothetical protein

Coordinates

chr18:-:1683771..1691172

Molecular Weight (calculated)

82645.1 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.210

Length

747 amino acids

Sequence
(BLAST)

001: MKPHTPASSF VTRLPHVPYF RGATAARAAP SDPPHDAPGG LEFRRVSTAK RRRVSLSVCH ASRVTAASNP GGSDGDGDTR ARSSRRGVLM APFLVAGASI
101: LLSAATARAE EKAAESPLAS APKPEEPPKK KEEEEVITSR IYDATVIGEP LAIGKEKGKV WEKLMNARVV YLGEAEQVPV RDDRELELEI VKNLHRRCLE
201: KEKLLSLALE VFPANLQEPL NQYMDKKIDG DTLKSYTLHW PPQRWQEYEP ILSYCRENGI HLVACGTPLK ILRTVQAEGI RGLTKDERKL YAPPAGSGFI
301: SGFTSISRRS SVDSTQNLSI PFGPSSYLSA QARVVDEYSM SQIILQNVLD GGVTGMLIVV TGASHVTYGS RGTGVPARIS GKIQKKNHAV ILLDPERQFI
401: RREGEVPVAD FLWYSAARPC SRNCFDRAEI ARVMNAAGRR RDALPQDLQK GIDLGLVSPE VLQNFFDLEQ YPLISELTHR FQGFRERLLA DPKFLHRLAI
501: EEAISITTTL LAQYEKRKEN FFQEIDYVIT DTVRGSVVDF FTVWLPAPTL SFLSYADEMK APDNIGSLMG LLGSIPDNAF QKNPAGINWN LNHRIASVVF
601: GGLKLASVGF ISSIGAVASS NSLYAIRKVL NPAVVTEQRI MRSPILKTAF IYACFLGISA NLRYQIIAGI VEHRISEQFA SQTFFVNMLS FVARTVNSYW
701: GTQQWIDLAR FTGLQVRKTE PSASDPPNPA AILCNETEEA SIDEREK

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.