CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010606_P004	Maize	plastid	79.65	91.91
TraesCS1B01G307600.1	Wheat	plastid	69.0	69.57
TraesCS1A01G298100.1	Wheat	plastid	68.6	69.54
TraesCS1D01G293100.1	Wheat	plastid	68.87	69.34
EES03820	Sorghum	mitochondrion	66.71	67.44
GSMUA_Achr6P35670_001	Banana	plastid	59.03	61.78
GSMUA_AchrUn_...	Banana	plastid	61.46	60.8
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	56.2	55.67
AT2G40400.1	Thale cress	plastid	53.64	54.15
CDX93185	Canola	plastid	53.5	53.94
CDY31998	Canola	plastid	53.5	53.43
KRH31203	Soybean	plastid	53.77	53.34
AT3G56140.1	Thale cress	plastid	53.5	53.29
CDY52926	Canola	plastid	53.23	53.16
Bra017008.1-P	Field mustard	plastid	53.23	53.16
KRG97671	Soybean	plastid	53.5	53.15
Bra003229.1-P	Field mustard	plastid	52.97	53.04
CDX67635	Canola	plastid	52.97	52.89
Solyc06g050620.2.1	Tomato	mitochondrion	53.23	52.88
PGSC0003DMT400061517	Potato	mitochondrion	53.1	52.74
HORVU1Hr1G070330.11	Barley	cytosol	67.12	41.5
EES18163	Sorghum	plastid	16.98	30.51
KXG34151	Sorghum	plastid	16.31	28.95
EES13002	Sorghum	mitochondrion, plastid	9.57	28.74
KXG33587	Sorghum	plastid	11.86	25.66
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	2.43	24.32
EES11134	Sorghum	plastid	12.8	23.93
EER98239	Sorghum	plastid	12.8	21.79
EES16982	Sorghum	plastid	14.15	19.52

Protein Annotations

EnsemblPlants:KXG22205	EnsemblPlantsGene:SORBI_3009G171300	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:IPR006311	InterPro:RETICULATA-related
InterPro:TAT_signal	PANTHER:PTHR31620	PANTHER:PTHR31620:SF6	PFAM:PF04187	PFAM:PF11891	PFscan:PS51318
ProteinID:KXG22205	ProteinID:KXG22205.1	SEG:seg	SUPFAM:SSF159501	UniParc:UPI00081AC332	UniProt:A0A1B6P9S4
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:52674274..52683715

Molecular Weight (calculated)

80729.8 Da

IEP (calculated)

5.089

GRAVY (calculated)

-0.186

Length

742 amino acids

Sequence
(BLAST)

001: MLSHAPSRSP AAFFKPRPSS AGSRLGAKHL PVTATASTRR SVSASAASRR GFLLFVPSLA AATAVLRPLA SAATEADDAE IPAPRPSPTE EEPLSPQPAA
101: EAEAEAETKP EPSESPMSRV YDATVLGEPE ALAGDARGRV WEKLAAARVV YLGEAELQSD PEDRVVELEI VRGLAARCAD AGRGLALALE AFPCDLQQQL
201: DQFMDGRIDG RILKLYTSHW SQDLWQQYEP LLNYCHDTGI KLIACGTPLE VKRTVQADGI RALKKAEREA YAPPAGSGFI SGFMFGSGRS LIDKLSSMDD
301: SLFGPTSYLS EQARVVDDYT ISQVITRELS DGDLSRLLIV VTGASHVMYG PRGSGVPGRI SKKVPKKDQV VVLLDPERQV IRTEGEVPIA DFLWYSGAKP
401: CTRNCFDRAE IAQVMNAAGR RPEALPQDLQ KGLDLGVVSP EILQNFFDLE KYPVMTELIH RFQGFRERLL ADPKFLQRLA IEEAISISTT LLAQYERRKG
501: RFFEEIDYVL TDTIRGSVVD FFTVWLPAPT ISVLQYADDG SGQSLEFVKG LLGSLPDNAF QKNILGQDWS IKQRIAAVLV GGLKLASVGF ISSVGAGVSS
601: DLVYAARGIV KPSANVETGR KRAPIWKSAA VYSCFLGTSS NLRYQIIAGL VEYRLGESLV TYYNQPLIAG LLSFVARTLN SYWGTQQWVD LARYTGLQKS
701: EEKPPAAEAT MPPDSAHLEG CTTEGHDFDD SSNNTDESTG PS

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.