Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G293100.1 | Wheat | plastid | 51.67 | 84.12 |
| TraesCS1A01G298100.1 | Wheat | plastid | 51.25 | 84.02 |
| TraesCS1B01G307600.1 | Wheat | plastid | 51.42 | 83.83 |
| HORVU5Hr1G020100.2 | Barley | cytosol | 14.42 | 73.62 |
| Zm00001d010606_P004 | Maize | plastid | 39.08 | 72.94 |
| KXG22205 | Sorghum | plastid | 41.5 | 67.12 |
| HORVU3Hr1G088220.12 | Barley | mitochondrion, plastid | 40.25 | 65.98 |
| GSMUA_AchrUn_... | Banana | plastid | 38.17 | 61.07 |
| GSMUA_Achr6P35670_001 | Banana | plastid | 35.83 | 60.65 |
| KRH31203 | Soybean | plastid | 34.33 | 55.08 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 34.33 | 55.01 |
| CDY31998 | Canola | plastid | 34.0 | 54.91 |
| AT3G56140.1 | Thale cress | plastid | 34.08 | 54.9 |
| KRG97671 | Soybean | plastid | 34.17 | 54.89 |
| Bra003229.1-P | Field mustard | plastid | 33.83 | 54.79 |
| CDX67635 | Canola | plastid | 33.83 | 54.64 |
| AT2G40400.1 | Thale cress | plastid | 33.25 | 54.29 |
| Bra017008.1-P | Field mustard | plastid | 33.58 | 54.24 |
| Solyc06g050620.2.1 | Tomato | mitochondrion | 33.75 | 54.22 |
| CDX93185 | Canola | plastid | 33.25 | 54.21 |
| CDY52926 | Canola | plastid | 33.42 | 53.97 |
| PGSC0003DMT400061517 | Potato | mitochondrion | 33.58 | 53.95 |
| HORVU0Hr1G000510.2 | Barley | cytosol | 5.75 | 30.26 |
| HORVU3Hr1G109880.1 | Barley | plastid | 9.42 | 29.05 |
| HORVU2Hr1G090260.1 | Barley | plastid | 7.5 | 22.06 |
| HORVU3Hr1G079620.1 | Barley | mitochondrion, plastid | 7.0 | 20.24 |
| HORVU2Hr1G049760.6 | Barley | cytosol, peroxisome | 6.0 | 20.22 |
| HORVU5Hr1G030040.1 | Barley | plastid | 9.08 | 19.89 |
| HORVU7Hr1G082560.2 | Barley | mitochondrion | 6.42 | 18.38 |
Protein Annotations
| Gene3D:1.20.1270.60 | MapMan:22.5.5.3.6 | Gene3D:3.30.1520.10 | Gene3D:3.40.50.11550 | UniProt:A0A287G4B1 | InterPro:AH/BAR_dom_sf |
| InterPro:Cofac_haem-bd_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0035091 |
| EnsemblPlantsGene:HORVU1Hr1G070330 | EnsemblPlants:HORVU1Hr1G070330.11 | InterPro:IPR001683 | InterPro:IPR027267 | InterPro:IPR036871 | PFAM:PF00787 |
| PFAM:PF04187 | PFAM:PF09325 | PFAM:PF11891 | PFscan:PS50195 | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF6 |
| InterPro:PX_dom_sf | InterPro:Phox | InterPro:RETICULATA-related | SMART:SM00312 | SUPFAM:SSF159501 | SUPFAM:SSF64268 |
| UniParc:UPI000B46CF50 | InterPro:Vps5_C | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:489139160..489149049
Molecular Weight (calculated)
122406.0 Da
IEP (calculated)
9.796
GRAVY (calculated)
-0.274
Length
1200 amino acids
Sequence
(BLAST)
(BLAST)
0001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXAANGGSAP VFSRITVSDP
0101: KKHAEPVSGA AGVIPGSGSY FSYLVTTRLA DGAAEVRVRR RFRDVVALAD RLAAAHRGLF VPARPDKSLV EGQVMQRHDF VSQRCTALQR YLRRLAAHPV
0201: VAASPDLRTF LTEPGAIAAF QGEAPQHWTT TVNAAIPQVP AKAGRDLFGM FKDLKQTVVN GLVATKPPPV EEETDTEFLS HKSRLEDLQQ QLTTTSQQAE
0301: SLVKAQDDLR TTTAHLGMTL IKLAKFEREQ ATCNSERRRA GVIQHFANSV VKFSRSQAKL NSEVVQQLDT IHEYLEMMIS VHHAFTDRSN ALQHVQSLSA
0401: DLFFLHTRAG RLESVSSRGI GQEWTRYQKI EGLKETISTR EGVKNQALRE YENIKENNMT EIKRFDKDRR RDLIEMLKGF VVNQVSYSDH FANMWGKVAE
0501: ETKVLPEKRA PKMSHAPARN AAASSSFKPL LPSPRSRLST RPLTSGTAPS PSSSSPRRSV SASASSRRDF LLLIPSLAAA SAVLRAAPSS AADDQASPPP
0601: PAESPPPAPP APTQAKEPEG DESAVSRVYD ATVIGEPQAV GREAKGRVWD KLASARVVYL GEAELVPDPD DRVLELEIVT KLAGRLAEAE RRLSLALEAF
0701: PCDLQQQLDQ FMSGRINGST LKSYTSHWPS ERWKEYEPLL NFCRDNGIKL VASGTPLQVK RTVQAEGIGG LSKAERKEYA PPAGSGFISG FRSGRSFIEN
0801: ITSTRDSPFG PNSYLSAQAR VVDEYTMSQI IMKELNGRDP PGMLIVVAGA SHLIYGSRGT GVPARVSKKL PKKDQVVVLL DPERQSIRRE GQIPVADFLW
0901: YSAAKTCTRN CFDRAEIARV MNAAGRRPEA LPQDLQKGID LGVVSPEILQ NFFDLDKNPV MTELIHRFQG FRERLLADPK FLQRLAIEEA ISISTTLLAQ
1001: YERRKGRFFE EIDYVLTDTI RGSVVDFFTV WLPAPTISVL SFTDDDSGQS LGFVKGLLGT LPDNAFQKNS FGQNWNMNQR VAAVIVGGLK LAGVGFISSV
1101: GAGVSSDLLY AARGVLKPSV SVGAGRKRAP VLKSAAVYSC FLGTSANLRY QVIAGLLEHR LGESLATQYN QPLLAGLLSF VARTANSYLG TQSTTNETSL
0101: KKHAEPVSGA AGVIPGSGSY FSYLVTTRLA DGAAEVRVRR RFRDVVALAD RLAAAHRGLF VPARPDKSLV EGQVMQRHDF VSQRCTALQR YLRRLAAHPV
0201: VAASPDLRTF LTEPGAIAAF QGEAPQHWTT TVNAAIPQVP AKAGRDLFGM FKDLKQTVVN GLVATKPPPV EEETDTEFLS HKSRLEDLQQ QLTTTSQQAE
0301: SLVKAQDDLR TTTAHLGMTL IKLAKFEREQ ATCNSERRRA GVIQHFANSV VKFSRSQAKL NSEVVQQLDT IHEYLEMMIS VHHAFTDRSN ALQHVQSLSA
0401: DLFFLHTRAG RLESVSSRGI GQEWTRYQKI EGLKETISTR EGVKNQALRE YENIKENNMT EIKRFDKDRR RDLIEMLKGF VVNQVSYSDH FANMWGKVAE
0501: ETKVLPEKRA PKMSHAPARN AAASSSFKPL LPSPRSRLST RPLTSGTAPS PSSSSPRRSV SASASSRRDF LLLIPSLAAA SAVLRAAPSS AADDQASPPP
0601: PAESPPPAPP APTQAKEPEG DESAVSRVYD ATVIGEPQAV GREAKGRVWD KLASARVVYL GEAELVPDPD DRVLELEIVT KLAGRLAEAE RRLSLALEAF
0701: PCDLQQQLDQ FMSGRINGST LKSYTSHWPS ERWKEYEPLL NFCRDNGIKL VASGTPLQVK RTVQAEGIGG LSKAERKEYA PPAGSGFISG FRSGRSFIEN
0801: ITSTRDSPFG PNSYLSAQAR VVDEYTMSQI IMKELNGRDP PGMLIVVAGA SHLIYGSRGT GVPARVSKKL PKKDQVVVLL DPERQSIRRE GQIPVADFLW
0901: YSAAKTCTRN CFDRAEIARV MNAAGRRPEA LPQDLQKGID LGVVSPEILQ NFFDLDKNPV MTELIHRFQG FRERLLADPK FLQRLAIEEA ISISTTLLAQ
1001: YERRKGRFFE EIDYVLTDTI RGSVVDFFTV WLPAPTISVL SFTDDDSGQS LGFVKGLLGT LPDNAFQKNS FGQNWNMNQR VAAVIVGGLK LAGVGFISSV
1101: GAGVSSDLLY AARGVLKPSV SVGAGRKRAP VLKSAAVYSC FLGTSANLRY QVIAGLLEHR LGESLATQYN QPLLAGLLSF VARTANSYLG TQSTTNETSL
001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
Arabidopsis Description
RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.