Factsheet for HORVU3Hr1G109880.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	42.42	77.1
Os01t0957200-01	Rice	plastid	75.32	75.32
HORVU0Hr1G000510.2	Barley	cytosol	43.19	73.68
Bra008880.1-P	Field mustard	cytosol	50.64	70.11
GSMUA_Achr8P08530_001	Banana	plastid	58.61	60.64
CDX97204	Canola	plastid	57.07	59.36
Bra006164.1-P	Field mustard	plastid	56.81	58.47
CDX70479	Canola	plastid	56.3	58.4
CDY53965	Canola	plastid	56.81	58.31
CDX78491	Canola	plastid	56.3	58.24
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	54.24	57.97
Zm00001d042050_P001	Maize	plastid	61.7	57.83
KRH29040	Soybean	endoplasmic reticulum	54.5	57.61
AT5G12470.1	Thale cress	plastid	56.04	56.48
KXG34151	Sorghum	plastid	60.15	55.98
PGSC0003DMT400082409	Potato	plastid	55.27	52.31
Solyc11g065490.1.1	Tomato	plastid	55.01	51.82
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	22.88	25.0
HORVU2Hr1G090260.1	Barley	plastid	24.94	23.77
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	21.34	20.0
HORVU7Hr1G082560.2	Barley	mitochondrion	19.79	18.38
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	30.08	15.98
HORVU5Hr1G030040.1	Barley	plastid	20.82	14.78
HORVU5Hr1G020100.2	Barley	cytosol	6.68	11.06
HORVU1Hr1G070330.11	Barley	cytosol	29.05	9.42

Protein Annotations

EnsemblPlants:HORVU3Hr1G109880.1	EnsemblPlantsGene:HORVU3Hr1G109880	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF7	PFAM:PF11891
SEG:seg	UniParc:UPI000B46C238	UniProt:A0A287MNA1	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr3H:-:679460293..679464382

Molecular Weight (calculated)

41972.9 Da

IEP (calculated)

8.664

GRAVY (calculated)

0.045

Length

389 amino acids

Sequence
(BLAST)

001: RQPAMASPSQ SPMLPSSPSA HRQPSSPHHL GQLHLHAPSR ISLLRSLPLR LRLAIPRPRL PTLPLALPSY SDGNNNNNDN NGGGGAGDDE AGDSGGEWGG
101: QRGEALFVLA QAGRKLSSLP ADLAAAVEGG RVTGDIVRRF AEMDASPLLR WLLRFRGFRE RLLADDLFLA KLAMEMGVGM IAKTAAEYEK RRENFVKEID
201: IVIADVVMAI VADFMLVYLP APTVSLQPPL ARNAGLITSF LHNCPDNAFQ IALAGRSFSI LQRLGAIVRN GAKLFAVGTG ASLVGTGVTN ALIKARKAVD
301: KDLDDEIDDI PVVSTSIAYG IYMAVSSNLR YQILSGVIEQ RMLEPVLHNH KLLLSALCFA VRTGNTFLGS LLWVDYARMV GVQKAEEEI

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.