Factsheet for PGSC0003DMT400082409

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065490.1.1	Tomato	plastid	97.57	97.09
Bra008880.1-P	Field mustard	cytosol	53.04	77.58
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	39.9	76.64
HORVU0Hr1G000510.2	Barley	cytosol	38.93	70.18
CDX70479	Canola	plastid	60.58	66.4
CDX97204	Canola	plastid	59.85	65.78
CDX78491	Canola	plastid	60.1	65.69
Bra006164.1-P	Field mustard	plastid	60.1	65.34
CDY53965	Canola	plastid	59.85	64.91
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	57.18	64.56
GSMUA_Achr8P08530_001	Banana	plastid	58.39	63.83
AT5G12470.1	Thale cress	plastid	59.85	63.73
KRH29040	Soybean	endoplasmic reticulum	56.2	62.77
TraesCS1B01G254100.1	Wheat	unclear	57.42	61.78
Os05t0388600-01	Rice	plasma membrane	56.69	61.64
TraesCS1D01G242600.1	Wheat	golgi	57.18	61.2
Zm00001d038085_P001	Maize	plastid	57.42	60.98
TraesCS1A01G242600.1	Wheat	plastid	56.93	60.94
Os01t0957200-01	Rice	plastid	55.72	58.87
PGSC0003DMT400017452	Potato	plastid	54.26	58.68
EES18163	Sorghum	plastid	57.18	56.9
HORVU3Hr1G109880.1	Barley	plastid	52.31	55.27
Zm00001d042050_P001	Maize	plastid	52.31	51.81
KXG34151	Sorghum	plastid	51.34	50.48
PGSC0003DMT400001155	Potato	plastid	22.63	24.28
PGSC0003DMT400016786	Potato	plastid	20.92	24.23
PGSC0003DMT400071250	Potato	plastid	21.41	24.18
PGSC0003DMT400062339	Potato	mitochondrion	24.09	23.02
PGSC0003DMT400061517	Potato	mitochondrion	30.66	16.87
PGSC0003DMT400061143	Potato	plastid	19.71	15.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400082409	EnsemblPlantsGene:PGSC0003DMG400032528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11	PFAM:PF11891	PGSC:PGSC0003DMG400032528	SEG:seg
UniParc:UPI000296170A	UniProt:M1D5V8	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032528]

Coordinates

chr11:-:37256323..37265649

Molecular Weight (calculated)

43616.5 Da

IEP (calculated)

8.571

GRAVY (calculated)

0.051

Length

411 amino acids

Sequence
(BLAST)

001: MPIAAAVNFH PVTTRYGGAL ALQPSPSLRT SVSVCNNAVN TNAARVASLS LSMNSSPNFT SGRRTFLMLS FAAVGGGGGD SDDNFNGGNG GGNGGGGGGG
101: GDGGNEESGD QKRNKKEALM ALTEAGRSLD SLPKDLKAAI EDGRIPGSIV LRYFELEKSP LMAWLLQFGG FKERLLADDL FLAKVGMECG VGIFTKTAAE
201: YERRRENFFN ELEIVVADVV MAVIADFMLV YLPAPTVSLR PRMAAVNAGR IAKFFYNCPD NAFQMALPGT SYSVLQRIGA IARNGSKLFA VGTASSLVGT
301: LVTNAVLNAK KAVNKSAAEE VENLPVVSTS VAYGVYMAVS SNLRYQVVAG VIEQRILEPM LHKHKLMLSA MCFAVRTGNT FLGSLLWVDY ARLIGIQKAH
401: DEAPSEKAHE A

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.