Factsheet for PGSC0003DMT400071250

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074880.1.1	Tomato	plastid	94.23	95.54
PGSC0003DMT400016786	Potato	plastid	69.78	71.55
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	45.33	67.07
VIT_08s0056g00560.t01	Wine grape	plastid	60.99	63.25
EES13002	Sorghum	mitochondrion, plastid	42.03	61.94
KRH40643	Soybean	mitochondrion	57.42	59.89
KRH00511	Soybean	endoplasmic reticulum	56.87	59.65
AT3G08640.1	Thale cress	plastid	55.22	59.64
AT3G08630.1	Thale cress	plastid	55.49	59.59
CDY27990	Canola	plastid	52.47	59.5
Bra029704.1-P	Field mustard	plastid	52.47	59.5
CDY35990	Canola	plastid	52.47	59.32
CDY22156	Canola	plastid	54.12	57.77
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	45.33	56.9
Os01t0812900-01	Rice	plastid	54.12	56.61
CDY66586	Canola	plastid	53.02	56.43
Zm00001d043119_P001	Maize	plastid	51.65	54.97
KXG33587	Sorghum	plastid	51.65	54.81
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	51.37	54.52
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	51.37	53.58
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	51.92	53.54
TraesCS3D01G330200.1	Wheat	plastid	52.2	53.52
GSMUA_Achr8P01660_001	Banana	plastid	51.65	53.11
GSMUA_Achr11P...	Banana	plastid	51.37	50.82
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	51.1	44.82
PGSC0003DMT400017452	Potato	plastid	25.82	24.74
PGSC0003DMT400001155	Potato	plastid	24.45	23.24
PGSC0003DMT400082409	Potato	plastid	24.18	21.41
PGSC0003DMT400062339	Potato	mitochondrion	23.35	19.77
PGSC0003DMT400061143	Potato	plastid	19.51	13.55
PGSC0003DMT400061517	Potato	mitochondrion	23.35	11.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400071250	EnsemblPlantsGene:PGSC0003DMG400027703	EntrezGene:107057868	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	PGSC:PGSC0003DMG400027703	RefSeq:XP_015158417.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002954BCD	UniProt:M1CNF3	MapMan:35.1	:

Description

Alphavirus core protein family [Source:PGSC_GENE;Acc:PGSC0003DMG400027703]

Coordinates

chr10:+:48679220..48684222

Molecular Weight (calculated)

38727.6 Da

IEP (calculated)

8.770

GRAVY (calculated)

-0.012

Length

364 amino acids

Sequence
(BLAST)

001: MVAMSQLRCS PLTGYYQNHN QSRDLSGVSA RFCDNRVCFN PLKTGYIVSK QVDHLRYQVP CVGGGDGGSI GIGRGSGGGG GGGSGDWSKG GDSDDSKSSW
101: DSIGPIGAFV NGWRSRVAAD PQFPFKVLME ELVGVSANVL GDMASRPNFG LNELDFVFST LVVGSIMNFV LMYLLAPTAS ASIQTLPLMF ASCPPSHMFQ
201: SGSYGLLSRL GTFVYKGTQF AAVGFAAGLV GTALSNGLIK LRKKMDPNFE TPNKPPPTLL NAATWAIHMG LSSNLRYQTL NGVEFVLAKG LPPLVFKTSV
301: IALRCANNIL GGMTFVMLAK FTGSQKADKP DEGKVVRVED TLVGEKERLL DQNDSMHTAD AASK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.