Factsheet for Os01t0812900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33587	Sorghum	plastid	81.9	83.09
Zm00001d043119_P001	Maize	plastid	80.17	81.58
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	79.6	80.76
EES13002	Sorghum	mitochondrion, plastid	55.17	77.73
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	77.3	77.08
TraesCS3D01G330200.1	Wheat	plastid	78.45	76.9
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	77.59	76.49
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	46.55	65.85
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	76.44	64.1
CDY27990	Canola	plastid	53.45	57.94
CDY35990	Canola	plastid	52.87	57.14
Bra029704.1-P	Field mustard	plastid	52.59	57.01
PGSC0003DMT400016786	Potato	plastid	58.05	56.9
Solyc09g031940.1.1	Tomato	plastid	58.05	56.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	46.55	55.86
KRH00511	Soybean	endoplasmic reticulum	54.89	55.04
AT3G08640.1	Thale cress	plastid	53.16	54.9
AT3G08630.1	Thale cress	plastid	53.45	54.87
CDY22156	Canola	plastid	53.74	54.84
KRH40643	Soybean	mitochondrion	54.6	54.44
CDY66586	Canola	plastid	53.45	54.39
Solyc10g074880.1.1	Tomato	plastid	56.03	54.32
VIT_08s0056g00560.t01	Wine grape	plastid	54.6	54.13
PGSC0003DMT400071250	Potato	plastid	56.61	54.12
KRH09563	Soybean	plastid	49.71	54.06
GSMUA_Achr8P01660_001	Banana	plastid	51.15	50.28
GSMUA_Achr11P...	Banana	plastid	53.16	50.27
Os05t0388600-01	Rice	plasma membrane	26.44	24.34
Os01t0957200-01	Rice	plastid	27.01	24.16
Os04t0524400-01	Rice	plastid	24.14	21.05
Os07t0240300-01	Rice	plastid	22.99	18.06
Os05t0474600-02	Rice	cytosol	20.11	16.13
Os12t0283800-01	Rice	extracellular, plastid	10.63	15.68
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	26.15	12.18
Os03t0390900-01	Rice	plastid	6.03	10.1
Os05t0474500-01	Rice	cytosol	0.29	0.2

Protein Annotations

EnsemblPlants:Os01t0812900-01	EnsemblPlantsGene:Os01g0812900	EntrezGene:4327588	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:BAD68215.1	ProteinID:BAD82677.1
ProteinID:BAF06510.2	ProteinID:BAS74888.1	RefSeq:XP_015622125.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0000457DCF
UniProt:Q5VQR0	MapMan:35.1	:	:	:	:

Description

Similar to alphavirus core protein family. (Os01t0812900-01)

Coordinates

chr1:-:34558533..34559935

Molecular Weight (calculated)

35054.0 Da

IEP (calculated)

9.105

GRAVY (calculated)

0.278

Length

348 amino acids

Sequence
(BLAST)

001: MASMAFTAAK FLPATAPTHL DSSPRLSPPR AGSLSFSPLS SSSSALLLRL RSPSPSGPSG PGGRLPPPPR SYGGGGGSGD AADSGGSSGG ILGIFLAGWA
101: ARVAADPQFP FKVLMEELVG VSACVLGDMA SRPNFGLNEL DFVFSTLVVG SILNFVLMYL LAPTAGASAA ASAAASGLPS HMFEAGAYSL GSRVATLLSK
201: GATFAAVGFA AGLAGTAISN GLISLRKRMD PAFETPNKAP PTLLNAATWA IHMGVSSNLR YQTLNGVEYL LANAAPPSVF KVSVVALRCI NNVLGGMSFV
301: LLARLTGSQK SDAPAASATA EEEKERLIAV GNDIAADAVG AGRDGEGK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.