Factsheet for Os07t0240300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	67.04	83.43
EER98239	Sorghum	plastid	81.94	83.26
Zm00001d019249_P002	Maize	mitochondrion, plastid	81.49	81.31
TraesCS2B01G261500.1	Wheat	golgi, unclear	78.33	81.07
TraesCS2D01G241700.1	Wheat	golgi, unclear	77.88	80.61
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	77.2	80.28
VIT_08s0007g01250.t01	Wine grape	cytosol	55.3	65.68
Os04t0524400-01	Rice	plastid	54.4	60.4
Bra005154.1-P	Field mustard	plastid	55.76	58.39
CDX91387	Canola	plastid	55.76	58.25
CDX74930	Canola	plastid	55.08	57.68
KRH49190	Soybean	endoplasmic reticulum	57.34	57.34
CDY59488	Canola	plastid	54.18	57.28
CDY07766	Canola	plastid	53.27	57.0
Bra000024.1-P	Field mustard	plastid	54.63	56.81
KRH00055	Soybean	plastid	56.66	56.4
AT2G37860.4	Thale cress	plastid	53.5	54.86
Os03t0390900-01	Rice	plastid	20.09	42.79
Os05t0388600-01	Rice	plasma membrane	20.54	24.07
Os01t0957200-01	Rice	plastid	20.77	23.65
Os01t0812900-01	Rice	plastid	18.06	22.99
Os12t0283800-01	Rice	extracellular, plastid	9.48	17.8
Os05t0474600-02	Rice	cytosol	17.16	17.51
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	19.86	11.78
Os05t0474500-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	EntrezGene:4342806	EMBL:AK072205	EMBL:AK098977	ProteinID:BAC83529.1	ProteinID:BAF21177.1
ProteinID:BAT00767.1	GO:GO:0000302	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009648	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	GO:GO:0048366	EnsemblPlantsGene:Os07g0240300
EnsemblPlants:Os07t0240300-01	PFAM:PF11891	PANTHER:PTHR31038	PANTHER:PTHR31038:SF5	UniProt:Q7F0B4	InterPro:RETICULATA-related
TMHMM:TMhelix	UniParc:UPI00001BF35F	RefSeq:XP_015644587.1	RefSeq:XP_015644588.1	SEG:seg	:

Description

Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein. (Os07t0240300-01)

Coordinates

chr7:+:7790213..7795023

Molecular Weight (calculated)

45746.9 Da

IEP (calculated)

7.105

GRAVY (calculated)

0.054

Length

443 amino acids

Sequence
(BLAST)

001: MSMAFSCAGA RLQQGRVGVG KCRGGGGGGG GAAVVRRSGC CLYPGGRRGL GVRGIRAELP PRACADGGGG ATTSGSTVAV PDAGEVADHV KEVGAVAPPS
101: VLPKGERGEV ADVDGSGGNG KLPSSGGGGD GDNGGGGGGG DGGDGGDEGD DEFGPILSFD QVVQEVEKRG VSLPSLPADM IEAAKSVGIQ KLLLLRYLDM
201: QASAWPLGPA IRSCSLLRNR MLVDPSFLFK IGTEIVIDTC CATFAEVQKR GEEFWSEFEL YAADMLVGVV VNVALVGMLA PYARFGGGSA SPGLLGRVRH
301: AYDSLPSSVF EAERPGYSFS IQQRIGTYFF KGILYGTVGF FCGLVGQGIA NLIMTAKRSV KKSDDDVPVP PLLKTSALWG AFLGVSSNTR YQIINGLERV
401: VEASPVAKRV PAVSLAFTVG VRFANNIYGG MQFVDWARMT GCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.