CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59488	Canola	plastid	95.65	94.51
Bra000024.1-P	Field mustard	plastid	96.62	93.9
CDX74930	Canola	plastid	86.96	85.11
CDX91387	Canola	plastid	86.72	84.67
AT2G37860.4	Thale cress	plastid	85.75	82.18
VIT_08s0007g01250.t01	Wine grape	cytosol	62.8	69.71
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	53.38	62.08
KRH49190	Soybean	endoplasmic reticulum	65.7	61.4
KRH00055	Soybean	plastid	65.46	60.9
CDY26956	Canola	plastid	58.45	57.48
CDX92336	Canola	plastid	57.73	56.5
EER98239	Sorghum	plastid	57.25	54.36
TraesCS2B01G261500.1	Wheat	golgi, unclear	55.8	53.97
TraesCS2A01G234300.1	Wheat	mitochondrion, plastid	55.31	53.76
TraesCS2D01G241700.1	Wheat	golgi, unclear	55.56	53.74
Os07t0240300-01	Rice	plastid	57.0	53.27
Zm00001d019249_P002	Maize	mitochondrion, plastid	56.76	52.93
CDX88782	Canola	plastid	53.62	38.41
CDX71014	Canola	plastid	54.35	38.07
CDX78491	Canola	plastid	24.4	26.86
CDX70479	Canola	plastid	24.15	26.67
CDY53965	Canola	plastid	24.4	26.65
CDX97204	Canola	plastid	23.91	26.47
CDY35990	Canola	plastid	19.32	24.84
CDY27990	Canola	plastid	19.08	24.61
CDY22156	Canola	plastid	18.84	22.87
CDY66586	Canola	plastid	18.84	22.81
CDX87117	Canola	plastid	20.05	15.78
CDX80466	Canola	plastid	20.05	15.75
CDY52926	Canola	plastid	22.46	12.52
CDX93185	Canola	plastid	22.22	12.5
CDX67635	Canola	plastid	21.98	12.25
CDY31998	Canola	plastid	21.74	12.11
CDX88129	Canola	cytosol	19.08	4.57
CDY67668	Canola	mitochondrion	0.97	2.37

Protein Annotations

EnsemblPlants:CDY07766	EnsemblPlantsGene:GSBRNA2T00124895001	GO:A0A078F312	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31038
PANTHER:PTHR31038:SF5	PFAM:PF11891	ProteinID:CDY07766	ProteinID:CDY07766.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDF466	UniProt:A0A078F312	MapMan:35.1	:	:	:

Description

BnaA03g17450DProtein RETICULATA, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G37860) UniProtKB/Swiss-Prot;Acc:B9DFK5]

Coordinates

chrLK031980:-:848357..850481

Molecular Weight (calculated)

45161.5 Da

IEP (calculated)

5.372

GRAVY (calculated)

0.021

Length

414 amino acids

Sequence
(BLAST)

001: MSGCAMNFQL SSVVRCRNDI SSLRICNRDF VFGDLVKEMK VPVLRIKGKQ RSRLLVVNMS QSPVEPQSIV EVESDINLGK GDNVRNLGTD ETEKFESGGD
101: VGNGFNGGDG NGGGGDDGEE DYEEKEFGPV LKFEEVMRET EARGATLPSD MLEAAKTFGI RKFLLLRYLD LQSSPGLLGF AIRSWSMLRN RMLADPSFLF
201: KIGTEIVIDS CCATVAEVQK RGKDFWAEFE LYVADLLVGV VVNVALVGML APFVRFGQPS ASTGFLGRML NAYNALPSSV FEAERPGCSF SAQQRLATYF
301: YKGIMYGAVG FGCGIVGQGI ANLIMTAKRS INKSEEDIPV PPLIKSAVLW GVFLSVSSNT RYQIINGLER VVEASPFAKK VPPAALAFTV GVRFANNIYG
401: GMQFVDWARL SGCQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.