CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27990	Canola	plastid	2.96	1.56
CDY35990	Canola	plastid	2.96	1.55
CDY22156	Canola	plastid	2.96	1.47
CDY66586	Canola	plastid	2.96	1.46
CDX87117	Canola	plastid	4.14	1.33
CDX80466	Canola	plastid	4.14	1.33
CDX67635	Canola	plastid	4.73	1.08
CDY31998	Canola	plastid	4.73	1.08
CDX97204	Canola	plastid	2.37	1.07
CDX70479	Canola	plastid	2.37	1.07
CDX78491	Canola	plastid	2.37	1.06
CDY53965	Canola	plastid	2.37	1.06
CDY07766	Canola	plastid	2.37	0.97
CDY59488	Canola	plastid	2.37	0.95
CDX93185	Canola	plastid	4.14	0.95
CDY26956	Canola	plastid	2.37	0.95
CDX92336	Canola	plastid	2.37	0.95
CDX74930	Canola	plastid	2.37	0.95
CDX91387	Canola	plastid	2.37	0.94
CDY52926	Canola	plastid	4.14	0.94
CDX88782	Canola	plastid	2.37	0.69
CDX71014	Canola	plastid	2.37	0.68
CDX88129	Canola	cytosol	6.51	0.64

Protein Annotations

EnsemblPlants:CDY67668	EnsemblPlantsGene:GSBRNA2T00065304001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR45521	ProteinID:CDY67668	ProteinID:CDY67668.1	SUPFAM:SSF50978	UniParc:UPI0004EE26CC	UniProt:A0A078JJB8
MapMan:35.2	:	:	:	:	:

Description

BnaC07g49640DBnaC07g49640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJB8]

Coordinates

chrLK036370:+:8197..9123

Molecular Weight (calculated)

19286.9 Da

IEP (calculated)

9.753

GRAVY (calculated)

-0.549

Length

169 amino acids

Sequence
(BLAST)

001: MLRARAFRQT NGKIVKIQVH PTHPWIVTAD DTDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG DSDYKGKPTE AIRGGSVKQV RFYDDDVRYW
101: QLWRNRSAAA ESPSAVNHLT SGFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKS ELDNRSLLW

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.