CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006636.1-P	Field mustard	plastid	93.57	94.21
CDX88782	Canola	plastid	91.88	93.94
CDY26956	Canola	plastid	56.85	79.81
CDX92336	Canola	plastid	55.84	78.01
AT5G22790.1	Thale cress	plastid	54.99	75.06
PGSC0003DMT400001155	Potato	plastid	40.61	62.66
Solyc11g066740.1.1	Tomato	plastid	40.44	62.4
KRH26562	Soybean	plastid	40.44	62.24
KRH22744	Soybean	plastid	38.58	59.07
VIT_06s0061g01160.t01	Wine grape	plastid	39.93	57.7
CDY59488	Canola	plastid	38.58	54.42
CDY07766	Canola	plastid	38.07	54.35
CDX91387	Canola	plastid	38.75	54.01
CDX74930	Canola	plastid	38.58	53.9
CDY22156	Canola	plastid	14.38	24.93
CDY27990	Canola	plastid	13.37	24.61
CDY66586	Canola	plastid	14.04	24.27
CDY35990	Canola	plastid	13.2	24.22
CDX97204	Canola	plastid	15.23	24.06
CDY53965	Canola	plastid	15.06	23.48
CDX70479	Canola	plastid	14.89	23.47
CDX78491	Canola	plastid	14.55	22.87
CDX80466	Canola	plastid	15.57	17.46
CDX87117	Canola	plastid	14.21	15.97
CDX93185	Canola	plastid	17.26	13.86
CDY52926	Canola	plastid	17.26	13.73
CDX67635	Canola	plastid	16.41	13.06
CDY31998	Canola	plastid	16.41	13.06
CDX88129	Canola	cytosol	14.89	5.09
CDY67668	Canola	mitochondrion	0.68	2.37

Protein Annotations

EnsemblPlants:CDX71014	EnsemblPlantsGene:GSBRNA2T00140949001	GO:A0A078C4E4	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9
PFAM:PF11891	ProteinID:CDX71014	ProteinID:CDX71014.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF21BA
MapMan:35.1	:	:	:	:	:

Description

BnaC03g10980D

Coordinates

chrLK031791:-:3229787..3232459

Molecular Weight (calculated)

64624.6 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.250

Length

591 amino acids

Sequence
(BLAST)

001: MSLSLKISHL SNTLEPRDQC RAVRTFEFSS ICFRGGHWRT ELSSPKLRTR CAGSDAGISG GRSVPEWTYT GSKDETFSDL EIDDDGSNGG NGDSGGNNGY
101: GGDDDGEEEE EEEKEFGPLV KFDEVMKETE RRGITLPEDM SEAAKSVGIR KLFLLRYLDL QGSVWPLGFL MRTCSMLRNR MLADPSFLFK VGTEIAIDSC
201: CATFAEVQKR GDDFWSEFEL YAADLLVGLV VDVALVGLLA PYARIGKTSV ASSTGLFKGL RRSCAALPSS VFEAERPGCK FSVNQRIATF FYKGLLYGSV
301: GFGCGLIGQG IANMIMTAKR SIKKAEEDVP VPPLFKSAAL WGVFLGLSSN ARYQIINGLE RVVEGSTAAK RIPVVAMAFT VGVRFANNVY GGFLPRAGSL
401: FEPDSSNRTT QNEPEQDFPI SLAVCNNNGG LSKGYGFHHA TMSRVSQLTL IFRDKLQTTN QSSNKNSDAV VKKPLAPSSS NDRQTRGAAS WSSFQMPVHY
501: PSFTKEEYEA MSEDELDRLL KLYGLQPTNL GDLSSKKQFA IGAFLWEKGI DSSPGEHELV NPSSSIDGLG ESSLMGLMTA LKYTVHYVFR V

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.