Factsheet for Bra006636.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88782	Canola	plastid	96.76	98.27
CDX71014	Canola	plastid	94.21	93.57
Bra002429.1-P	Field mustard	plastid	57.75	80.71
AT5G22790.1	Thale cress	plastid	55.03	74.6
PGSC0003DMT400001155	Potato	plastid	40.37	61.88
KRH26562	Soybean	plastid	40.37	61.72
Solyc11g066740.1.1	Tomato	plastid	40.2	61.62
KRH22744	Soybean	plastid	38.67	58.81
VIT_06s0061g01160.t01	Wine grape	plastid	40.03	57.46
Bra005154.1-P	Field mustard	plastid	38.67	53.66
Bra000024.1-P	Field mustard	plastid	38.5	53.05
Bra008880.1-P	Field mustard	cytosol	13.8	28.83
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	11.75	28.05
Bra029704.1-P	Field mustard	plastid	13.12	23.99
Bra006164.1-P	Field mustard	plastid	14.65	22.75
Bra009789.1-P	Field mustard	plastid	15.33	17.01
Bra036522.1-P	Field mustard	plastid	14.65	16.54
Bra017008.1-P	Field mustard	plastid	17.21	13.59
Bra003229.1-P	Field mustard	plastid	16.7	13.23

Protein Annotations

EnsemblPlants:Bra006636.1	EnsemblPlants:Bra006636.1-P	EnsemblPlantsGene:Bra006636	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002540148	UniProt:M4CQZ5	MapMan:35.1	:	:	:

Description

AT5G22790 (E=3e-136) RER1 | RER1 (RETICULATA-RELATED 1)

Coordinates

chrA03:-:4403054..4405862

Molecular Weight (calculated)

64394.4 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.242

Length

587 amino acids

Sequence
(BLAST)

001: MSLSLKISHL SNTLEPRDQC RAGRTFEFSS ICFRGGHWST EMFSPKLRTR CAGSDAGISG GRSVPEWTYT GSKDETFSDL EIDDDGNGDS GGNNGGGGDD
101: DGEEEEEEEK EFGPLVKLDE VMKETERRGI ALPEDMSEAA KSVGIRKLFL LRYLDLQGSV WPLGFLMRTC TMLRNRMLAD PSFLFKVGTE IAIDSCCATF
201: AEVQKRGEDF WSEFELYAAD LLVGLVVDVA LVGLLAPYAR IGKTSVVSST GLFKGLKRSC AALPSSVFEA ERPGCKFSVN QRIATFFYKG VLYGSVGFGC
301: GLIGQGIANM IMTAKRSIKK SEEDVPVPPL FESAALWGVF LGLSSNARYQ IINGLERVVE GSTAAKRIPV VAMAFTVGVR FANNVYGGYL PRAGSLFEPD
401: SSNRTTQNEP EQDFPISLAV CNNNDDQKVY GFHHATMSRV SQLTLIFRDK LKTTNQSSNK KSDAVVKKQP LAPSSSNDRE TRGAASWSSF QMPVHYPSFT
501: KEEYEAMSEE EVDRLLNLYG LQHTNLGDLS CKKQFAIGAF LWEKGIDSSP AEHELVNPSS SVDGLGESSL MGLMTALKYM VHCVFRV

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.