Factsheet for VIT_06s0061g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g01250.t01	Wine grape	cytosol	66.26	72.65
PGSC0003DMT400001155	Potato	plastid	65.53	69.97
Solyc11g066740.1.1	Tomato	plastid	64.79	69.19
KRH26562	Soybean	plastid	64.55	68.75
KRH22744	Soybean	plastid	62.1	65.8
CDY26956	Canola	plastid	61.61	59.86
CDX92336	Canola	plastid	61.86	59.81
Bra002429.1-P	Field mustard	plastid	60.88	59.29
AT5G22790.1	Thale cress	plastid	61.12	57.74
CDX88782	Canola	plastid	57.46	40.66
Bra006636.1-P	Field mustard	plastid	57.46	40.03
CDX71014	Canola	plastid	57.7	39.93
VIT_08s0056g00560.t01	Wine grape	plastid	21.27	24.79
VIT_13s0064g00160.t01	Wine grape	plastid	22.98	24.74
VIT_06s0004g02400.t01	Wine grape	plastid	22.74	24.22
VIT_12s0034g01330.t01	Wine grape	cytosol	7.82	15.31
VIT_12s0034g01370.t01	Wine grape	plastid	16.63	13.05
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	19.8	10.81

Protein Annotations

EntrezGene:100854755	wikigene:100854755	MapMan:35.1	ProteinID:CCB44195	ProteinID:CCB44195.1	UniProt:F6GW60
EMBL:FN594957	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100854755	wikigene:LOC100854755
PFAM:PF11891	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI00015C99F2
ArrayExpress:VIT_06s0061g01160	EnsemblPlantsGene:VIT_06s0061g01160	EnsemblPlants:VIT_06s0061g01160.t01	unigene:Vvi.15685	RefSeq:XP_003632277	RefSeq:XP_003632277.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:18863045..18873344

Molecular Weight (calculated)

43863.3 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.000

Length

409 amino acids

Sequence
(BLAST)

001: MSVFSSSFRF LHLSDSQHDV AFTNQCSGSS AITKSPNLHF TNALHVPASS HSLSRNQVLV TRCAGAESPA KPVTDVEASF APKIEDNNSG DGSDGSDFGG
101: SGSGGGGGGG DGGEDNSGEE EFGRILKFEE VMREAENRGA SLPSDMWEAA KTTGIREVIL FRYLDLQGSV WPLGFGMKHF SMLRNRMLAD PSFLFKVGTE
201: VVIDSCCATF AEVQKRGKDF WAEFELYAAD LLVGVVVDIA LVGMLAPYTR FGQPSISRGL VGRIQHACAA LPSSVFEAER PGCRFSVKQR IATYFYKGVL
301: YGSVGFGCGL IGQGIANAIM TAKRSIKKSE DDIPVPPLLK SAALWGVFLA VSSNTRYQII NGLECVVEAS PLAKKVPPVA MAFTVGVRFA NNIYGGMQFV
401: DWAKWSGVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.