CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92336	Canola	plastid	96.44	95.98
AT5G22790.1	Thale cress	plastid	86.22	83.83
PGSC0003DMT400001155	Potato	plastid	59.86	65.8
KRH26562	Soybean	plastid	59.86	65.62
Solyc11g066740.1.1	Tomato	plastid	58.91	64.75
KRH22744	Soybean	plastid	57.72	62.95
VIT_06s0061g01160.t01	Wine grape	plastid	59.86	61.61
CDX91387	Canola	plastid	59.38	58.96
CDY59488	Canola	plastid	58.43	58.71
CDY07766	Canola	plastid	57.48	58.45
CDX74930	Canola	plastid	58.43	58.16
CDX88782	Canola	plastid	79.81	58.13
CDX71014	Canola	plastid	79.81	56.85
CDY27990	Canola	plastid	20.67	27.1
CDY35990	Canola	plastid	20.43	26.71
CDY22156	Canola	plastid	21.62	26.69
CDY66586	Canola	plastid	21.14	26.02
CDX70479	Canola	plastid	22.57	25.33
CDY53965	Canola	plastid	22.57	25.07
CDX97204	Canola	plastid	22.09	24.87
CDX78491	Canola	plastid	22.09	24.73
CDX80466	Canola	plastid	20.67	16.51
CDX87117	Canola	plastid	20.43	16.35
CDY52926	Canola	plastid	23.52	13.32
CDX93185	Canola	plastid	23.28	13.32
CDY31998	Canola	plastid	22.57	12.79
CDX67635	Canola	plastid	22.33	12.65
CDX88129	Canola	cytosol	20.19	4.91
CDY67668	Canola	mitochondrion	0.95	2.37

Protein Annotations

EnsemblPlants:CDY26956	EnsemblPlantsGene:GSBRNA2T00036709001	GO:A0A078GNR4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	PFAM:PF11891	ProteinID:CDY26956	ProteinID:CDY26956.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDE586	UniProt:A0A078GNR4	MapMan:35.1	:

Description

BnaC09g36270DBnaC09g36270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNR4]

Coordinates

chrLK032197:-:308272..310360

Molecular Weight (calculated)

45044.9 Da

IEP (calculated)

5.377

GRAVY (calculated)

-0.028

Length

421 amino acids

Sequence
(BLAST)

001: MSLTLKISHI SNLSGDVFNT VEPRIQCRAG QASVCFRRSP GFVSSRIHWS SELSSRSSRA RCVGSDVVTR EISGRSKDET FRDIEPELDG GDGGGGDDGG
101: INGGNGGGGD GGGGGGEGGN DGGEDEAEEK EFGPILKFDE VMKETERRGI ALPEDMLEAA KSVGIRKLFL LRYLDLQGSV WPLGFLMRTC TMLRNRMLAD
201: PSFLFKVGTE IAIDSCCATF AEVQKRGEDF WSEFELYAAD LLVGLVVDVA LVGLLAPYAR IGKTSVPSST GLFSGLKRSC AALPSSVFEA ERPGCKFSVN
301: QRIATFFYKG VLYGSVGFGC GLIGQGIANL IMTAKRSIKK SEEDVPVPPL FESAALWGVF LGLSSNARYQ IINGLERVVE GSTAAKRIPV VAMAFTVGVR
401: FANNVYGGMQ FVDWAKLSGV Q

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.