CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87117	Canola	plastid	88.99	89.16
AT5G24690.1	Thale cress	plastid	87.67	88.68
VIT_12s0034g01330.t01	Wine grape	cytosol	28.84	72.73
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	59.39	71.46
VIT_12s0034g01370.t01	Wine grape	plastid	70.02	70.83
KRH44019	Soybean	mitochondrion, nucleus, plastid	66.98	68.02
PGSC0003DMT400061143	Potato	plastid	66.79	67.18
Solyc01g104270.2.1	Tomato	plastid	66.6	66.98
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	66.22	66.73
Solyc10g045620.1.1	Tomato	cytosol	42.13	65.49
Os12t0283800-01	Rice	extracellular, plastid	28.65	63.98
Zm00001d041036_P001	Maize	cytosol	40.99	62.79
HORVU7Hr1G082560.2	Barley	mitochondrion	48.77	61.34
Solyc10g045630.1.1	Tomato	plastid	30.36	61.07
EES16982	Sorghum	plastid	56.93	55.76
TraesCS5B01G110100.1	Wheat	golgi	55.98	55.45
TraesCS5A01G110400.1	Wheat	plastid	55.98	55.35
TraesCS7B01G247100.1	Wheat	plastid	52.18	55.22
TraesCS7A01G335500.1	Wheat	plastid	51.8	55.15
TraesCS7D01G343200.1	Wheat	plastid	51.99	55.02
TraesCS5D01G123000.1	Wheat	plastid	55.6	54.87
Zm00001d023791_P002	Maize	plasma membrane	55.41	54.38
HORVU5Hr1G030040.1	Barley	plastid	55.03	52.92
CDX88129	Canola	cytosol	96.39	29.36
CDX97204	Canola	plastid	15.18	21.39
CDX70479	Canola	plastid	15.18	21.33
CDY27990	Canola	plastid	12.9	21.18
CDY35990	Canola	plastid	12.9	21.12
CDY26956	Canola	plastid	16.51	20.67
CDX78491	Canola	plastid	14.61	20.48
CDX74930	Canola	plastid	16.32	20.33
CDY53965	Canola	plastid	14.61	20.32
CDX91387	Canola	plastid	16.32	20.28
CDX92336	Canola	plastid	16.13	20.09
CDY07766	Canola	plastid	15.75	20.05
CDY66586	Canola	plastid	12.9	19.88
CDY59488	Canola	plastid	15.75	19.81
CDY22156	Canola	plastid	12.71	19.65
Os05t0474600-02	Rice	cytosol	15.18	18.43
CDX88782	Canola	plastid	17.46	15.92
CDX71014	Canola	plastid	17.46	15.57
CDX67635	Canola	plastid	20.68	14.67
CDY31998	Canola	plastid	20.68	14.67
CDX93185	Canola	plastid	19.73	14.13
CDY52926	Canola	plastid	19.73	14.0
CDY67668	Canola	mitochondrion	1.33	4.14
Os05t0474500-01	Rice	cytosol	0.19	0.2

Protein Annotations

EnsemblPlants:CDX80466	EnsemblPlantsGene:GSBRNA2T00133551001	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891
ProteinID:CDX80466	ProteinID:CDX80466.1	SEG:seg	UniParc:UPI0004EEB977	MapMan:35.1	:

Description

BnaC07g29780D

Coordinates

chrLK031821:-:660551..663497

Molecular Weight (calculated)

57405.9 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.145

Length

527 amino acids

Sequence
(BLAST)

001: MSHMVFQSVV APKPLSPLKP SLPIPRPIAT LPCKLRRSCF IRASSSSLID SVGDSVSGLE RCLQLQFSGE LGASSSGSAS PSAQMCPEMK GGKFGSVGAV
101: TLEKGKLDMT QKKVESTPEI ATGGGGGDIG KSVNFGGGDG GDDDGDDDDY FDEFDDDDDG DEGGLFRRRM FLAELFDRKF VDAVLNEWQK TMLDLPAGLR
201: QAYEMGLVSS AQMVKFLAIN ARPTTTRFIS RALPQGLSRA FVGRMLADPS FLYRLLLEQA ATVGCSVWWE VKTRKDRIKE EWDLALINVL TVSACNAAAV
301: WLLAPCRSYG NTFRFDLQNT LQKLPNNVFE MSYPLREFDL QKRIHSLFYK AAELSILGVA TGTLQGSLSN FLAGKKKNRV SVTVPSITTN ALGYGAFLGL
401: YANLRYQLLC GFERAMSNHF DVIGVALFFG TAVRIMNVQL GERSRQVWLG VEADPLAQSD DLLAKAYNRP SEEAAAAKPA SRWFISKNAI VSGLLGLKQQ
501: DSASESTPPK ARRKRIVRKK VAASSAP

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.