CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023791_P002	Maize	plasma membrane	93.12	93.3
Zm00001d041036_P001	Maize	cytosol	59.48	93.02
Os12t0283800-01	Rice	extracellular, plastid	40.52	92.37
TraesCS5B01G110100.1	Wheat	golgi	83.46	84.4
TraesCS5D01G123000.1	Wheat	plastid	83.27	83.9
TraesCS5A01G110400.1	Wheat	plastid	83.09	83.86
HORVU5Hr1G030040.1	Barley	plastid	82.53	81.02
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	53.72	65.98
VIT_12s0034g01330.t01	Wine grape	cytosol	24.72	63.64
VIT_12s0034g01370.t01	Wine grape	plastid	56.69	58.54
KRH44019	Soybean	mitochondrion, nucleus, plastid	56.13	58.19
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	56.13	57.74
AT5G24690.1	Thale cress	plastid	55.58	57.39
Solyc10g045620.1.1	Tomato	cytosol	36.06	57.23
Bra009789.1-P	Field mustard	plastid	56.13	57.09
CDX80466	Canola	plastid	55.76	56.93
Solyc01g104270.2.1	Tomato	plastid	55.02	56.49
Bra036522.1-P	Field mustard	plastid	54.46	56.35
PGSC0003DMT400061143	Potato	plastid	54.65	56.11
CDX87117	Canola	plastid	54.28	55.51
Solyc10g045630.1.1	Tomato	plastid	24.91	51.15
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	3.53	25.68
EES18163	Sorghum	plastid	16.91	22.03
EES11134	Sorghum	plastid	15.99	21.66
KXG34151	Sorghum	plastid	16.73	21.53
EES13002	Sorghum	mitochondrion, plastid	9.85	21.46
KXG33587	Sorghum	plastid	13.38	20.99
EER98239	Sorghum	plastid	15.8	19.5
CDX88129	Canola	cytosol	55.76	17.34
EES03820	Sorghum	mitochondrion	20.07	14.71
KXG22205	Sorghum	plastid	19.52	14.15

Protein Annotations

MapMan:35.1	EntrezGene:8086174	UniProt:C5YNH0	EnsemblPlants:EES16982	ProteinID:EES16982	ProteinID:EES16982.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0009507
GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	PFAM:PF11891	PANTHER:PTHR31038
PANTHER:PTHR31038:SF2	InterPro:RETICULATA-related	EnsemblPlantsGene:SORBI_3008G090900	unigene:Sbi.12172	UniParc:UPI0001A88366	RefSeq:XP_002443144.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:35636949..35652179

Molecular Weight (calculated)

58933.8 Da

IEP (calculated)

9.838

GRAVY (calculated)

-0.253

Length

538 amino acids

Sequence
(BLAST)

001: MASYLAAFHP TLSPDPITHP HRCPARPNPT TGLLRLLPSR HRARPPAAVR LAVSASSTSA PPPSADRSEA ASSLERCLSA TVSGAGMGTG AAPPASAPPR
101: APPAMKGGRK QYGAFGAVTL EKAKLDLSQR RKKIMPELAT GGGGGDIGKR IGHGGGDGGD DDGDDDDYFD DFDDGEEEEG GLFRRRIVVQ ELFNREFIEA
201: VLQEWCKTMS NLPAGLRQAC EMGLVSSAQM VRYLSIFARP TNTRSFSRAL PGWLSRGLVG RTLADPSFPH KMALEFMATF SSSIWWEMNI RKERFEQEWD
301: LVIVNALTAS CCNLMVLGLL APCRSYGSTS RFDFQNAIEK LPNNIFEKSY PLREFDLPKR ISAFFYKAAE LSLVGFVAGS VQGGMSKVLS ARKERRLSVT
401: IPSISTNALG YGAFLGLYAN LRYQLLCGLD QYMVKRFDVL GVAIFFSTAA RLMNIQIGEA SRRTWLGEEA DPQYSDRLLR AYKRPVEVYM DQQDSRWFIS
501: KDAIVSGLGL LGIKQGGPEA ALSKPRRKRV VRKKVASG

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.