Factsheet for TraesCS5B01G110100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G123000.1	Wheat	plastid	98.68	98.31
TraesCS5A01G110400.1	Wheat	plastid	98.5	98.31
HORVU5Hr1G030040.1	Barley	plastid	96.43	93.61
Os12t0283800-01	Rice	extracellular, plastid	39.1	88.14
Zm00001d041036_P001	Maize	cytosol	55.64	86.05
EES16982	Sorghum	plastid	84.4	83.46
Zm00001d023791_P002	Maize	plasma membrane	80.64	79.89
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	54.32	65.98
VIT_12s0034g01330.t01	Wine grape	cytosol	24.81	63.16
TraesCS7B01G247100.1	Wheat	plastid	57.71	61.65
VIT_12s0034g01370.t01	Wine grape	plastid	56.95	58.16
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	56.58	57.55
KRH44019	Soybean	mitochondrion, nucleus, plastid	55.83	57.23
CDX80466	Canola	plastid	55.45	55.98
AT5G24690.1	Thale cress	plastid	54.51	55.66
Bra009789.1-P	Field mustard	plastid	55.26	55.58
Solyc10g045620.1.1	Tomato	cytosol	35.34	55.46
Bra036522.1-P	Field mustard	plastid	54.14	55.38
Solyc01g104270.2.1	Tomato	plastid	54.14	54.96
PGSC0003DMT400061143	Potato	plastid	54.14	54.96
CDX87117	Canola	plastid	54.14	54.75
Solyc10g045630.1.1	Tomato	plastid	24.44	49.62
TraesCS2B01G394800.1	Wheat	golgi, plastid	16.73	22.65
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	14.47	22.06
TraesCS1B01G254100.1	Wheat	unclear	14.85	20.68
TraesCS2B01G261500.1	Wheat	golgi, unclear	15.6	19.39
CDX88129	Canola	cytosol	54.89	16.88
TraesCS1B01G307600.1	Wheat	plastid	21.24	15.35
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	20.49	15.12

Protein Annotations

EnsemblPlants:TraesCS5B01G110100.1	EnsemblPlantsGene:TraesCS5B01G110100	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:158116459..158137792

Molecular Weight (calculated)

57960.6 Da

IEP (calculated)

9.814

GRAVY (calculated)

-0.215

Length

532 amino acids

Sequence
(BLAST)

001: MASLAAFHPN LPHAHGHPSH PNPTSGLLRL LPSCRRHRAP RRRGLGLAVS ACASSAASPS AAGRGDRSEA ASSLERCLAA SALSAAAPAA APPRVPPAMK
101: GGKQYGAFGA VTLEKAKLDL SQRKKKIMPE LATGGGGGDI GKRIGHGGGD GGDDDGDDDD YFDDFDDGEE EDGGLFRRRI VIQELFNREF IDAVMQEWCK
201: TMISLPAGLR QAYEMGLVSS AQMVRFLSVF SRPTHTRSFS RALPGWLSRG LVGRTLADPS FPHKMAFEFL ATFASSVWWE MNIRKERFEQ EWDLAVVNAL
301: TASCCNLVIL GLLAPCRSYG STSRFDFQNA IEKLPNNIFE KSYPLREFDL QKRISAFLYK AAELSLVGVV AGSIQGGISK ALSARKDGRL SVTLPNVSTN
401: ALGYGAFLGL YANLRYQLLC GLDQYMIKRF DVLSMAIFIG TTLRLMNIQI GESSRRAWLG EEADPQYSDR LLRAYTRPVE VTAADQQESR WFISKDAVVS
501: GLGLLGIKQG GPEAQLSKPR RKRVIRKKVA SG

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.