Factsheet for TraesCS3B01G368200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	97.99	96.88
TraesCS3D01G330200.1	Wheat	plastid	97.13	95.49
KXG33587	Sorghum	plastid	80.52	81.92
Zm00001d043119_P001	Maize	plastid	78.51	80.12
Os01t0812900-01	Rice	plastid	77.08	77.3
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	75.93	77.26
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	91.12	76.63
EES13002	Sorghum	mitochondrion, plastid	53.87	76.11
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	44.7	63.41
CDY27990	Canola	plastid	51.58	56.07
CDY35990	Canola	plastid	50.72	54.97
Bra029704.1-P	Field mustard	plastid	50.43	54.83
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	44.99	54.14
PGSC0003DMT400016786	Potato	plastid	55.01	54.08
KRH40643	Soybean	mitochondrion	53.87	53.87
Solyc09g031940.1.1	Tomato	plastid	55.01	53.78
KRH00511	Soybean	endoplasmic reticulum	53.3	53.6
KRH09563	Soybean	plastid	48.71	53.12
Solyc10g074880.1.1	Tomato	plastid	53.87	52.37
AT3G08640.1	Thale cress	plastid	50.43	52.23
CDY22156	Canola	plastid	50.72	51.91
AT3G08630.1	Thale cress	plastid	50.14	51.62
PGSC0003DMT400071250	Potato	plastid	53.58	51.37
VIT_08s0056g00560.t01	Wine grape	plastid	51.29	51.0
CDY66586	Canola	plastid	49.57	50.58
GSMUA_Achr11P...	Banana	plastid	52.15	49.46
GSMUA_Achr8P01660_001	Banana	plastid	47.28	46.61
TraesCS1B01G254100.1	Wheat	unclear	22.06	20.16
TraesCS2B01G394800.1	Wheat	golgi, plastid	22.35	19.85
TraesCS2B01G261500.1	Wheat	golgi, unclear	23.78	19.39
TraesCS7B01G247100.1	Wheat	plastid	21.78	15.26
TraesCS5B01G110100.1	Wheat	golgi	22.06	14.47
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	25.79	12.48
TraesCS1B01G307600.1	Wheat	plastid	25.21	11.96

Protein Annotations

EnsemblPlants:TraesCS3B01G368200.1	EnsemblPlantsGene:TraesCS3B01G368200	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:580351952..580353001

Molecular Weight (calculated)

35452.9 Da

IEP (calculated)

9.144

GRAVY (calculated)

0.276

Length

349 amino acids

Sequence
(BLAST)

001: MAAPTAFAAA RFLPSAHLDS SARLAPLRAA PTSNLAFSPL PASSSALLAL RSASPSPSGP GGRLPPPPPP RSYGGGGGGS GDAADSGGAG DGAGGRAGIL
101: GMFLAGWAAR VAADPQFPFK VLMEELVGVT ACVLGDMSSR PNFGLNELDF VFSTLVVGSI LNFVLMYMLA PTAGVSAAAA AAVSSLPSHM FEPGPYSLGS
201: RFATLLSKGT TFAVVGFGAG LMGTAISNGL IAMRKRMDPA FETPNKAPPT LLNAGTWALH MGISSNLRYQ TLNGVEFLLG NVMPPPVFKV AVIALRCMNN
301: VLGGMSFVLL ARLTGAQKSD KPASSDSEAK ERLIAEGDAI AANVSTEDK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.