Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G08630.1 | Thale cress | plastid | 84.27 | 83.78 |
| Bra040052.1-P | Field mustard | golgi, plasma membrane, plastid | 60.83 | 83.33 |
| CDY22156 | Canola | plastid | 80.12 | 79.18 |
| CDY66586 | Canola | plastid | 80.12 | 78.95 |
| EES13002 | Sorghum | mitochondrion, plastid | 43.03 | 58.7 |
| VIT_08s0056g00560.t01 | Wine grape | plastid | 60.53 | 58.12 |
| KRH09563 | Soybean | plastid | 54.9 | 57.81 |
| Solyc09g031940.1.1 | Tomato | plastid | 60.24 | 56.86 |
| PGSC0003DMT400016786 | Potato | plastid | 59.64 | 56.62 |
| PGSC0003DMT400071250 | Potato | plastid | 59.64 | 55.22 |
| Solyc10g074880.1.1 | Tomato | plastid | 58.75 | 55.15 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 46.59 | 54.14 |
| Os01t0812900-01 | Rice | plastid | 54.9 | 53.16 |
| Zm00001d043119_P001 | Maize | plastid | 53.41 | 52.63 |
| KXG33587 | Sorghum | plastid | 52.52 | 51.6 |
| Zm00001d012539_P001 | Maize | extracellular, mitochondrion, plastid | 52.23 | 51.31 |
| TraesCS3B01G368200.1 | Wheat | golgi, plastid, unclear | 52.23 | 50.43 |
| TraesCS3A01G337100.1 | Wheat | golgi, plastid, unclear | 52.82 | 50.42 |
| TraesCS3D01G330200.1 | Wheat | plastid | 53.12 | 50.42 |
| GSMUA_Achr8P01660_001 | Banana | plastid | 52.52 | 50.0 |
| GSMUA_Achr11P... | Banana | plastid | 54.01 | 49.46 |
| HORVU3Hr1G079620.1 | Barley | mitochondrion, plastid | 52.82 | 42.89 |
| AT5G12470.1 | Thale cress | plastid | 26.41 | 23.06 |
| AT5G22790.1 | Thale cress | plastid | 27.6 | 21.48 |
| AT2G37860.4 | Thale cress | plastid | 25.82 | 20.14 |
| AT5G24690.1 | Thale cress | plastid | 22.26 | 14.4 |
| AT2G40400.1 | Thale cress | plastid | 25.52 | 11.7 |
| AT3G56140.1 | Thale cress | plastid | 24.63 | 11.14 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820011 | ProteinID:AAG51347.1 | ProteinID:AEE74657.1 | ArrayExpress:AT3G08640 | EnsemblPlantsGene:AT3G08640 |
| RefSeq:AT3G08640 | TAIR:AT3G08640 | RefSeq:AT3G08640-TAIR-G | EnsemblPlants:AT3G08640.1 | TAIR:AT3G08640.1 | EMBL:AY081327 |
| EMBL:AY128826 | Unigene:At.19866 | GO:GO:0000003 | GO:GO:0000302 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009648 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031969 | GO:GO:0048366 | RefSeq:NP_187476.1 |
| PFAM:PF11891 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0005660 | PO:PO:0006023 | PO:PO:0006085 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR31620 | PANTHER:PTHR31620:SF5 | UniProt:Q9C9Z2 | InterPro:RETICULATA-related | TMHMM:TMhelix | UniParc:UPI000009CC03 |
| SEG:seg | : | : | : | : | : |
Description
RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
Coordinates
chr3:+:2622849..2624308
Molecular Weight (calculated)
35254.6 Da
IEP (calculated)
9.020
GRAVY (calculated)
0.099
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.