Factsheet for VIT_08s0056g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	50.43	71.95
EES13002	Sorghum	mitochondrion, plastid	44.16	62.75
PGSC0003DMT400016786	Potato	plastid	63.25	62.54
Bra029704.1-P	Field mustard	plastid	56.41	61.68
Solyc10g074880.1.1	Tomato	plastid	62.96	61.56
Solyc09g031940.1.1	Tomato	plastid	62.39	61.34
CDY35990	Canola	plastid	56.13	61.18
KRH40643	Soybean	mitochondrion	60.68	61.03
PGSC0003DMT400071250	Potato	plastid	63.25	60.99
KRH00511	Soybean	endoplasmic reticulum	60.11	60.81
AT3G08640.1	Thale cress	plastid	58.12	60.53
CDY27990	Canola	plastid	55.27	60.44
CDY22156	Canola	plastid	56.98	58.65
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	48.43	58.62
CDY66586	Canola	plastid	56.7	58.19
KRH09563	Soybean	plastid	52.99	58.12
AT3G08630.1	Thale cress	plastid	56.13	58.11
Zm00001d043119_P001	Maize	plastid	54.13	55.56
Os01t0812900-01	Rice	plastid	54.13	54.6
GSMUA_Achr8P01660_001	Banana	plastid	54.42	53.95
KXG33587	Sorghum	plastid	52.42	53.64
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	52.42	53.64
GSMUA_Achr11P...	Banana	plastid	54.13	51.63
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	51.0	51.29
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	51.0	50.71
TraesCS3D01G330200.1	Wheat	plastid	51.28	50.7
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	50.71	42.89
VIT_08s0007g01250.t01	Wine grape	cytosol	23.93	22.52
VIT_06s0004g02400.t01	Wine grape	plastid	24.5	22.4
VIT_13s0064g00160.t01	Wine grape	plastid	24.22	22.37
VIT_06s0061g01160.t01	Wine grape	plastid	24.79	21.27
VIT_12s0034g01330.t01	Wine grape	cytosol	10.54	17.7
VIT_12s0034g01370.t01	Wine grape	plastid	19.66	13.24
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	23.93	11.21

Protein Annotations

EntrezGene:100258770	wikigene:100258770	MapMan:35.1	ProteinID:CCB55961	ProteinID:CCB55961.1	UniProt:F6HMT6
EMBL:FN595995	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100258770	wikigene:LOC100258770
PFAM:PF11891	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI0001983A61
ArrayExpress:VIT_08s0056g00560	EnsemblPlantsGene:VIT_08s0056g00560	EnsemblPlants:VIT_08s0056g00560.t01	unigene:Vvi.6531	RefSeq:XP_002269239	RefSeq:XP_002269239.1
RefSeq:XP_010653119.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:795128..796756

Molecular Weight (calculated)

37351.0 Da

IEP (calculated)

7.953

GRAVY (calculated)

0.065

Length

351 amino acids

Sequence
(BLAST)

001: MATMSSHIFR SHLFSDHLRH HSHHLCSDLP PPTFPSQNLS FAPLRSRPTN PNPLWKYKLP QAGGNGGDSA GHGGRGGGGD GEGDGGSGGE SWEGFGVLGL
101: FLNGWRSRVS ADPQFPFKVL MEELVGVTAC VIGDMASRPN FGLNELDFVF STLVVGSIMN FVLMYLLAPT ASSVTPNLPA IFAGCPPGHM FESGSYGVLN
201: RFGTFVYKGV LFATVGFAAG LVGTAISNGL ISMRKKMDPN FVTPNKPPPT VLNAITWAIH MGLSSNFRYQ TLNGIEFLLA KGLPPLAFKS SVVVLRCFNN
301: ILGGMSFVLL ARLTGSQSVE EGKVVLAEAG SDAEKEKLVG EELPSNQSTC K

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.