CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	71.93	100.0
CDY22156	Canola	plastid	97.37	97.65
AT3G08640.1	Thale cress	plastid	78.95	80.12
CDY27990	Canola	plastid	73.1	77.88
CDY35990	Canola	plastid	72.51	77.02
EES13002	Sorghum	mitochondrion, plastid	41.81	57.89
KRH09563	Soybean	plastid	53.51	57.19
VIT_08s0056g00560.t01	Wine grape	plastid	58.19	56.7
Solyc09g031940.1.1	Tomato	plastid	57.31	54.9
PGSC0003DMT400016786	Potato	plastid	56.73	54.65
Os01t0812900-01	Rice	plastid	54.39	53.45
PGSC0003DMT400071250	Potato	plastid	56.43	53.02
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	44.74	52.76
Solyc10g074880.1.1	Tomato	plastid	54.97	52.37
Zm00001d043119_P001	Maize	plastid	51.46	51.46
KXG33587	Sorghum	plastid	51.46	51.31
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	51.17	51.02
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	51.17	49.58
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	50.58	49.57
GSMUA_Achr11P...	Banana	plastid	53.22	49.46
TraesCS3D01G330200.1	Wheat	plastid	51.17	49.3
GSMUA_Achr8P01660_001	Banana	plastid	50.58	48.87
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	50.29	41.45
CDX97204	Canola	plastid	25.73	23.53
CDX70479	Canola	plastid	25.73	23.47
CDX78491	Canola	plastid	25.44	23.14
CDY53965	Canola	plastid	25.44	22.96
CDY26956	Canola	plastid	26.02	21.14
CDX92336	Canola	plastid	25.73	20.8
CDX74930	Canola	plastid	24.27	19.62
CDX91387	Canola	plastid	24.27	19.58
CDY59488	Canola	plastid	23.1	18.85
CDY07766	Canola	plastid	22.81	18.84
CDX88782	Canola	plastid	23.98	14.19
CDX71014	Canola	plastid	24.27	14.04
CDX87117	Canola	plastid	20.18	13.12
CDX80466	Canola	plastid	19.88	12.9
CDX67635	Canola	plastid	24.56	11.31
CDY31998	Canola	plastid	24.27	11.17
CDX93185	Canola	plastid	23.39	10.87
CDY52926	Canola	plastid	23.39	10.77
CDX88129	Canola	cytosol	19.59	3.87
CDY67668	Canola	mitochondrion	1.46	2.96

Protein Annotations

EnsemblPlants:CDY66586	EnsemblPlantsGene:GSBRNA2T00054609001	GO:A0A078JLA9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:CDY66586	ProteinID:CDY66586.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB961	UniProt:A0A078JLA9	MapMan:35.1	:

Description

BnaCnng51520DBnaCnng51520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLA9]

Coordinates

chrLK035344:+:6974..8378

Molecular Weight (calculated)

35914.7 Da

IEP (calculated)

9.321

GRAVY (calculated)

0.131

Length

342 amino acids

Sequence
(BLAST)

001: MAAIARLHLS AKSNPNLPPP RAINLSRDPR IAVSFPRSGS VCSLHTNFSS PNLPIPCAGG GGGGGGNFGN PPSGGGGGGG DGGEEGSSSS SWGPIGMFIE
101: GWRSRVSADP QFPFKVLMEE LVGVTACVLG DMASRPNFGL NELDFVFSTL VVGSILNFML MYLLAPTSAT AGVSQRLPGI FRNCPSGHMF EQGGFTVMNR
201: FGTLVYKGMV FATVGLAAGL VGTAISNGLI MLRKKMDPGF ETPNKPPPTV LNSLTWATHM GVSANVRYQT LNGVEFLLAR AMPPVVFKTS VFVLRCVNNV
301: VGGMSFVLLA RMTGSQSVEG KSEVGVEEEK TKTEIHVKVK DV

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.