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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 3
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
unclear: 26455813
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400071250 Potato plastid 95.54 94.23
Solyc09g031940.1.1 Tomato plastid 68.52 68.91
Bra040052.1-P Field mustard golgi, plasma membrane, plastid 46.24 67.48
VIT_08s0056g00560.t01 Wine grape plastid 61.56 62.96
EES13002 Sorghum mitochondrion, plastid 42.9 62.35
Bra029704.1-P Field mustard plastid 52.65 58.88
AT3G08640.1 Thale cress plastid 55.15 58.75
KRH40643 Soybean mitochondrion 57.1 58.74
CDY35990 Canola plastid 52.37 58.39
CDY27990 Canola plastid 52.09 58.26
KRH00511 Soybean endoplasmic reticulum 56.27 58.21
AT3G08630.1 Thale cress plastid 54.87 58.11
CDY22156 Canola plastid 53.48 56.3
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 45.4 56.21
Os01t0812900-01 Rice plastid 54.32 56.03
CDY66586 Canola plastid 52.37 54.97
Zm00001d043119_P001 Maize plastid 51.53 54.09
KXG33587 Sorghum plastid 51.53 53.94
Zm00001d012539_P001 Maize extracellular, mitochondrion, plastid 51.53 53.94
TraesCS3B01G368200.1 Wheat golgi, plastid, unclear 52.37 53.87
TraesCS3A01G337100.1 Wheat golgi, plastid, unclear 52.92 53.82
TraesCS3D01G330200.1 Wheat plastid 53.2 53.8
GSMUA_Achr8P01660_001 Banana plastid 51.81 52.54
GSMUA_Achr11P... Banana plastid 51.25 50.0
HORVU3Hr1G079620.1 Barley mitochondrion, plastid 51.81 44.82
Solyc01g087750.2.1 Tomato nucleus, plastid 25.35 23.95
Solyc11g066740.1.1 Tomato plastid 23.96 22.45
Solyc11g065490.1.1 Tomato plastid 24.51 21.31
Solyc09g011340.2.1 Tomato plastid 22.56 18.93
Solyc10g045620.1.1 Tomato cytosol 13.93 14.75
Solyc01g104270.2.1 Tomato plastid 18.66 12.79
Solyc06g050620.2.1 Tomato mitochondrion 22.56 10.84
Solyc10g045630.1.1 Tomato plastid 4.46 6.11
Protein Annotations
EnsemblPlants:Solyc10g074880.1.1EnsemblPlantsGene:Solyc10g074880.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:RETICULATA-related
PANTHER:PTHR31620PANTHER:PTHR31620:SF5PFAM:PF11891SEG:segTMHMM:TMhelixUniParc:UPI0002769A63
UniProt:K4D1T0MapMan:35.1::::
Description
No Description!
Coordinates
chr10:+:58588458..58589537
Molecular Weight (calculated)
38125.9 Da
IEP (calculated)
8.276
GRAVY (calculated)
0.005
Length
359 amino acids
Sequence
(BLAST)
001: MSQLRCSPLT GYYHSHNQSR DLSGVSARFC DNRVCFNPLK TGDVVFKQLD HLKYQVPCVG VGGGDGGSGG IGRGSGGGGG DWSKGGDSDD SKSSWDGIGP
101: IGAFVNGWRS RVAADPQFPF KVLMEELVGV SANVLGDMAS RPNFGLNELD FVFSTLVVGS IMNFVLMYLL APTASASIQT LPLMFANCPP SHMFQSGSYG
201: LLSRLGTFVY KGTQFAAVGF AAGLVGTALS NGLIKLRKKM DPNFETPNKP PPTLLNAATW AIHMGISSNL RYQTLNGVEF VLAKGLPPLV FKTSVIALRC
301: ANNILGGMTF VMLAKLTGSQ KADKPDEGKV VCVEDTLVGE KERLLDQNDS IHTADAASK
Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)
001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
Arabidopsis Description
RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.