Factsheet for Solyc11g066740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001155	Potato	plastid	97.39	97.39
VIT_06s0061g01160.t01	Wine grape	plastid	69.19	64.79
KRH26562	Soybean	plastid	64.75	64.58
KRH22744	Soybean	plastid	63.71	63.21
CDY26956	Canola	plastid	64.75	58.91
Bra002429.1-P	Field mustard	plastid	64.49	58.81
CDX92336	Canola	plastid	64.75	58.63
AT5G22790.1	Thale cress	plastid	63.97	56.58
Solyc09g011340.2.1	Tomato	plastid	60.57	54.21
CDX88782	Canola	plastid	61.62	40.83
CDX71014	Canola	plastid	62.4	40.44
Bra006636.1-P	Field mustard	plastid	61.62	40.2
Solyc01g087750.2.1	Tomato	nucleus, plastid	24.8	25.0
Solyc10g074880.1.1	Tomato	plastid	22.45	23.96
Solyc09g031940.1.1	Tomato	plastid	21.93	23.53
Solyc11g065490.1.1	Tomato	plastid	24.8	23.0
Solyc10g045620.1.1	Tomato	cytosol	16.19	18.29
Solyc01g104270.2.1	Tomato	plastid	20.89	15.27
Solyc06g050620.2.1	Tomato	mitochondrion	20.1	10.31
Solyc10g045630.1.1	Tomato	plastid	5.74	8.4

Protein Annotations

EnsemblPlants:Solyc11g066740.1.1	EnsemblPlantsGene:Solyc11g066740.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF9	PFAM:PF11891	SEG:seg	TMHMM:TMhelix
UniParc:UPI000276A145	UniProt:K4D9T1	MapMan:35.1	:	:	:

Description

Protein RETICULATA-RELATED 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G22790) UniProtKB/Swiss-Prot;Acc:Q9FGP9]

Coordinates

chr11:+:52536993..52542211

Molecular Weight (calculated)

41587.3 Da

IEP (calculated)

8.645

GRAVY (calculated)

0.063

Length

383 amino acids

Sequence
(BLAST)

001: MALLQSSLSH ISNLSISSNT TQIPQFKGLN LSKFVSLQQS IMKTDRFFRI TCTGQESIVR TVDGGDGGNG KGGFPSDNNG GGDDGDGGGD YDEKEFGPIV
101: KFDEVVKEAE KLGAKLPIDM LEAAKTTGIR RLILSRYLDM QGSAWPLGFL MRHCSMLRNR MLADPSFLFK VGTEIVIDSC CATFAEVQKR GKDFWAEFEL
201: YAADLLVGIV VDIALVGMLA PYVRIGKQSV SSSSFGRFRH ACGALPSSVF EAERPGCKFT LQQRISTFFY KGFLYGSVGF GCGLVGQGIA NLIMTAKRSI
301: KKSEEDIPVP PLIGSAALWG FFLAVSSNTR YQIINGLERL VEASPVAKRV PPVALAFTVG VRFANNIYGG MQFVEWAKLS GVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.