Factsheet for Solyc11g065490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
endoplasmic reticulum: 29145071

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082409	Potato	plastid	97.09	97.57
Bra008880.1-P	Field mustard	cytosol	52.54	77.22
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	39.71	76.64
HORVU0Hr1G000510.2	Barley	cytosol	38.5	69.74
CDX70479	Canola	plastid	60.05	66.13
CDX78491	Canola	plastid	59.56	65.43
CDX97204	Canola	plastid	59.08	65.24
Bra006164.1-P	Field mustard	plastid	59.56	65.08
CDY53965	Canola	plastid	59.08	64.38
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	56.66	64.29
GSMUA_Achr8P08530_001	Banana	plastid	58.11	63.83
AT5G12470.1	Thale cress	plastid	59.32	63.47
KRH29040	Soybean	endoplasmic reticulum	55.69	62.5
Os05t0388600-01	Rice	plasma membrane	56.17	61.38
TraesCS1B01G254100.1	Wheat	unclear	56.66	61.26
TraesCS1D01G242600.1	Wheat	golgi	56.42	60.68
Zm00001d038085_P001	Maize	plastid	56.66	60.47
TraesCS1A01G242600.1	Wheat	plastid	56.17	60.42
Solyc01g087750.2.1	Tomato	nucleus, plastid	54.96	59.74
Os01t0957200-01	Rice	plastid	55.21	58.61
EES18163	Sorghum	plastid	56.42	56.42
HORVU3Hr1G109880.1	Barley	plastid	51.82	55.01
Zm00001d042050_P001	Maize	plastid	52.06	51.81
KXG34151	Sorghum	plastid	51.09	50.48
Solyc11g066740.1.1	Tomato	plastid	23.0	24.8
Solyc09g031940.1.1	Tomato	plastid	21.31	24.65
Solyc10g074880.1.1	Tomato	plastid	21.31	24.51
Solyc09g011340.2.1	Tomato	plastid	24.21	23.36
Solyc10g045620.1.1	Tomato	cytosol	13.56	16.52
Solyc06g050620.2.1	Tomato	mitochondrion	28.81	15.93
Solyc01g104270.2.1	Tomato	plastid	20.1	15.84
Solyc10g045630.1.1	Tomato	plastid	7.75	12.21

Protein Annotations

EnsemblPlants:Solyc11g065490.1.1	EnsemblPlantsGene:Solyc11g065490.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11	PFAM:PF11891	SEG:seg	UniParc:UPI0002769979
UniProt:K4D9G1	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr11:-:50927522..50936267

Molecular Weight (calculated)

43875.7 Da

IEP (calculated)

9.004

GRAVY (calculated)

0.049

Length

413 amino acids

Sequence
(BLAST)

001: MQFAAAAAAV NFHPVTTRYG GALALQPSPS LRTSVSISNN AVNTNAARVA SLSLSMNSSH NFTSGRRTFL MLSFAAVGGG GGDSDDNFNG GNGGGNGGGG
101: GGGDGGNEES GDQKRNKKEA LMALTEAGRS LDSLPKDLKA AIEDGRIPGS IVLRYFELEK SPLMAWLLRF GGFKERLLAD DLFLAKVGME CGVGIFTKTA
201: AEYERRRENF FNELEIVVAD VVMAVIADFM LVYLPAPTVS LRPRMAAVNA GRIAKFFYNC PDNAFQMALP GTSYSLLQRI GAIARNGSKL FAVGTASSLV
301: GTLVTNAVLN AKKAVNSSAA EEVENLPVVS TSVAYGVYMA VSSNLRYQVV AGVIEQRILE PMLHKHKLML SAMCFAVRTG NTFLGSLLWV DYARLIGIQK
401: AHDEAPSQKA HEA

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.