Factsheet for Solyc10g045620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g01330.t01	Wine grape	cytosol	45.72	74.16
Os12t0283800-01	Rice	extracellular, plastid	45.13	64.83
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	62.83	48.63
Solyc01g104270.2.1	Tomato	plastid	74.93	48.47
VIT_12s0034g01370.t01	Wine grape	plastid	71.68	46.64
KRH44019	Soybean	mitochondrion, nucleus, plastid	67.26	43.93
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	66.96	43.4
AT5G24690.1	Thale cress	plastid	66.67	43.38
CDX80466	Canola	plastid	65.49	42.13
Bra009789.1-P	Field mustard	plastid	65.49	41.97
HORVU7Hr1G082560.2	Barley	mitochondrion	51.62	41.77
Bra036522.1-P	Field mustard	plastid	64.01	41.73
CDX87117	Canola	plastid	64.01	41.25
Zm00001d041036_P001	Maize	cytosol	40.71	40.12
TraesCS7A01G335500.1	Wheat	plastid	52.8	36.16
Zm00001d023791_P002	Maize	plasma membrane	57.23	36.13
EES16982	Sorghum	plastid	57.23	36.06
TraesCS7D01G343200.1	Wheat	plastid	52.8	35.94
TraesCS5A01G110400.1	Wheat	plastid	56.05	35.65
TraesCS7B01G247100.1	Wheat	plastid	52.21	35.54
TraesCS5D01G123000.1	Wheat	plastid	55.75	35.39
TraesCS5B01G110100.1	Wheat	golgi	55.46	35.34
HORVU5Hr1G030040.1	Barley	plastid	54.28	33.58
Solyc11g066740.1.1	Tomato	plastid	18.29	16.19
Solyc09g011340.2.1	Tomato	plastid	18.58	14.72
Solyc01g087750.2.1	Tomato	nucleus, plastid	16.22	14.47
Solyc09g031940.1.1	Tomato	plastid	15.04	14.29
Solyc10g074880.1.1	Tomato	plastid	14.75	13.93
Solyc11g065490.1.1	Tomato	plastid	16.52	13.56
Os05t0474600-02	Rice	cytosol	16.52	12.9
CDX88129	Canola	cytosol	65.19	12.77
Solyc10g045630.1.1	Tomato	plastid	7.37	9.54
Solyc06g050620.2.1	Tomato	mitochondrion	19.17	8.7
Os05t0474500-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc10g045620.1.1	EnsemblPlantsGene:Solyc10g045620.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002769A2D
UniProt:K4CZS7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr10:-:34892870..34894886

Molecular Weight (calculated)

37664.8 Da

IEP (calculated)

10.158

GRAVY (calculated)

-0.075

Length

339 amino acids

Sequence
(BLAST)

001: MLEGITRWES NPHQQSESSG GQPMELLKFP MQKLSSQKIS GKNNCLRQAL ALYGKMIADP VFLYKLLLEQ ASTIGCSVWW EIKNRKERIK QEWDLALLNV
101: LTVTACNAIV VWSLAPCRSY GNTFQFDLQN TLQKLPNNVF EKSYPLREFD LQKRIQSFFY KAAELCLVGL TTGAFQGAVS NLVVTRKKGR LSVTVPSVSS
201: NALGYGAFLG LYANLRYQLL CGFDRAVVNH FDVIGVALFF STALRVLNVR VGEASRLAWL GVEVDPLAHS DDVLKAYSRP TEGLDQPSSK WFLSKNAIVS
301: GLGLLGIKQG QTGIASEGET PVPKARRKRI VRKKVTSQA

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.