Factsheet for Solyc01g104270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061143	Potato	plastid	97.52	97.52
VIT_12s0034g01330.t01	Wine grape	cytosol	30.15	75.6
Solyc10g045620.1.1	Tomato	cytosol	48.47	74.93
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	59.92	71.69
Solyc10g045630.1.1	Tomato	plastid	35.69	71.37
VIT_12s0034g01370.t01	Wine grape	plastid	70.23	70.63
KRH44019	Soybean	mitochondrion, nucleus, plastid	68.32	68.98
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	68.13	68.26
AT5G24690.1	Thale cress	plastid	66.41	66.79
CDX80466	Canola	plastid	66.98	66.6
CDX87117	Canola	plastid	66.41	66.16
Bra036522.1-P	Field mustard	plastid	65.65	66.15
Bra009789.1-P	Field mustard	plastid	66.41	65.78
Os12t0283800-01	Rice	extracellular, plastid	29.2	64.83
Zm00001d041036_P001	Maize	cytosol	41.6	63.37
HORVU7Hr1G082560.2	Barley	mitochondrion	47.71	59.67
EES16982	Sorghum	plastid	56.49	55.02
Zm00001d023791_P002	Maize	plasma membrane	55.73	54.38
TraesCS5B01G110100.1	Wheat	golgi	54.96	54.14
TraesCS5A01G110400.1	Wheat	plastid	54.96	54.03
TraesCS7A01G335500.1	Wheat	plastid	50.95	53.94
TraesCS5D01G123000.1	Wheat	plastid	54.96	53.93
TraesCS7D01G343200.1	Wheat	plastid	51.15	53.82
TraesCS7B01G247100.1	Wheat	plastid	51.15	53.82
HORVU5Hr1G030040.1	Barley	plastid	54.58	52.19
Solyc01g087750.2.1	Tomato	nucleus, plastid	16.41	22.63
Solyc11g066740.1.1	Tomato	plastid	15.27	20.89
Solyc11g065490.1.1	Tomato	plastid	15.84	20.1
CDX88129	Canola	cytosol	65.84	19.94
Solyc09g031940.1.1	Tomato	plastid	12.98	19.05
Solyc09g011340.2.1	Tomato	plastid	15.46	18.93
Solyc10g074880.1.1	Tomato	plastid	12.79	18.66
Os05t0474600-02	Rice	cytosol	14.89	17.97
Solyc06g050620.2.1	Tomato	mitochondrion	17.94	12.58
Os05t0474500-01	Rice	cytosol	0.19	0.2

Protein Annotations

EnsemblPlants:Solyc01g104270.2.1	EnsemblPlantsGene:Solyc01g104270.2	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891
SEG:seg	UniParc:UPI00027687F1	UniProt:K4B202	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1:+:92699219..92704824

Molecular Weight (calculated)

57228.5 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.177

Length

524 amino acids

Sequence
(BLAST)

001: MSLPVFQTAQ IKPINTQIIP YSKPLFPPLL CSQIRVYKVC KIKATSSPAV DGDPVSGLER CFQGSPALDH PTSSSSSTVM FAPVMKGGKY GALGSVTLEK
101: GKLDLSSKQQ TSSTPELSTG GGGGNMGKNL NHGGGDGGDD DGDDDDYFDD FDDGDEGDEG GLFRRRMLLQ ELFDRKFVDA VLNEWQKTML DLPPGLRQAY
201: EMGLVSSAQL VNFLAYNARP TVARFISRLL PEGLCRAFNG RKIADPAFLS KLLLDQALTI GCSVWWEVKN RKERIKQEWD LALLNVLTAM ACNAAVFWTL
301: APCQSYGNTF RFDLQNTLQK LPNNIFEKSY PLREFDLQKR IHSFFYKAAE LCMIGLSAGA VQGALSNLLA NKKEGRLSVS IPSVSSNALG YGAFLGVYAN
401: LRYQLLNGFD RAVFNYFDVI GVALVFSTAM RVLNVQVGET SRLAWLGVEV DPLAHSDDVL KAYSRPTEGG VEQSSSKWFI SKNSIVSGLG LLGIKQGQSG
501: STTEGETSAP KARRKRIVRK KVAS

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.