Factsheet for PGSC0003DMT400061143

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104270.2.1	Tomato	plastid	97.52	97.52
VIT_12s0034g01330.t01	Wine grape	cytosol	30.15	75.6
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	59.16	70.78
VIT_12s0034g01370.t01	Wine grape	plastid	70.04	70.44
KRH44019	Soybean	mitochondrion, nucleus, plastid	68.32	68.98
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	67.94	68.07
AT5G24690.1	Thale cress	plastid	66.6	66.99
CDX80466	Canola	plastid	67.18	66.79
CDX87117	Canola	plastid	66.6	66.35
Bra036522.1-P	Field mustard	plastid	65.65	66.15
Bra009789.1-P	Field mustard	plastid	66.6	65.97
Os12t0283800-01	Rice	extracellular, plastid	29.2	64.83
Zm00001d041036_P001	Maize	cytosol	41.79	63.66
HORVU7Hr1G082560.2	Barley	mitochondrion	48.09	60.14
EES16982	Sorghum	plastid	56.11	54.65
TraesCS5A01G110400.1	Wheat	plastid	55.15	54.22
Zm00001d023791_P002	Maize	plasma membrane	55.53	54.19
TraesCS7A01G335500.1	Wheat	plastid	51.15	54.14
TraesCS5B01G110100.1	Wheat	golgi	54.96	54.14
TraesCS7D01G343200.1	Wheat	plastid	51.34	54.02
TraesCS7B01G247100.1	Wheat	plastid	51.34	54.02
TraesCS5D01G123000.1	Wheat	plastid	54.96	53.93
HORVU5Hr1G030040.1	Barley	plastid	54.58	52.19
PGSC0003DMT400017452	Potato	plastid	16.22	22.37
PGSC0003DMT400001155	Potato	plastid	15.27	20.89
CDX88129	Canola	cytosol	66.03	20.0
PGSC0003DMT400082409	Potato	plastid	15.46	19.71
PGSC0003DMT400071250	Potato	plastid	13.55	19.51
PGSC0003DMT400016786	Potato	plastid	12.79	18.87
PGSC0003DMT400062339	Potato	mitochondrion	15.27	18.6
Os05t0474600-02	Rice	cytosol	14.69	17.74
PGSC0003DMT400061517	Potato	mitochondrion	17.94	12.58
Os05t0474500-01	Rice	cytosol	0.19	0.2

Protein Annotations

EnsemblPlants:PGSC0003DMT400061143	EnsemblPlantsGene:PGSC0003DMG400023789	EntrezGene:102582751	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941
GO:GO:0016020	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891	PGSC:PGSC0003DMG400023789
RefSeq:XP_006349389.1	SEG:seg	UniParc:UPI0002954E09	UniProt:M1C744	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023789]

Coordinates

chr1:+:80912941..80918870

Molecular Weight (calculated)

57165.4 Da

IEP (calculated)

9.052

GRAVY (calculated)

-0.203

Length

524 amino acids

Sequence
(BLAST)

001: MSLPVFQTAQ IKPINTQIIP YSKPLFPPLL CRPIRVYKVC KIKATASPAV DGDPVSGLER CFQGSPALDH PASSSSSTVM FAPVMKGGKY GALGSVTLEK
101: GKLDMSSKQQ TSSTPELSTG GGGGNMGKNL NHGGGDGGDD DGDDDDYFDD FDDGDEGDEG GLFRRRMLLQ ELFDRKFVDA VLNEWQKTML DLPPGLRQAY
201: EMGLVSSAQL VNFLAYNARP TVARFISRLL PQGLSRAFNG RKIADPAFLN KLLLDQALTI GCSVWWEVKN RKERIKQEWD LALLNVLTAT ACNAAVFWTL
301: APCQSYGNTF RYDLQNTLQK LPNNIFEKSY PLREFDLQKR IHSFFYKAAE LCMIGLSAGA VQGGLSNLLA SKKEGRLSVS IPSVSSNALG YGAFLGVYAN
401: LRYQLLNGFD RAVFNYFDVI GVALVFSTAM RALNVQVGET SRLAWLGVEV DPLAHSDDVL KAYSRPTEGG VEQSSSKWFI SKNSIVSGLG LLGIKQGQSG
501: STTEGETSAP KARRKRIVRK KVAS

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.