Factsheet for PGSC0003DMT400001155

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066740.1.1	Tomato	plastid	97.39	97.39
VIT_06s0061g01160.t01	Wine grape	plastid	69.97	65.53
KRH26562	Soybean	plastid	65.01	64.84
KRH22744	Soybean	plastid	64.23	63.73
CDY26956	Canola	plastid	65.8	59.86
Bra002429.1-P	Field mustard	plastid	65.54	59.76
CDX92336	Canola	plastid	65.8	59.57
AT5G22790.1	Thale cress	plastid	64.23	56.81
PGSC0003DMT400062339	Potato	mitochondrion	60.57	53.95
CDX88782	Canola	plastid	61.88	41.0
CDX71014	Canola	plastid	62.66	40.61
Bra006636.1-P	Field mustard	plastid	61.88	40.37
PGSC0003DMT400017452	Potato	plastid	24.54	24.74
PGSC0003DMT400071250	Potato	plastid	23.24	24.45
PGSC0003DMT400016786	Potato	plastid	22.45	24.23
PGSC0003DMT400082409	Potato	plastid	24.28	22.63
PGSC0003DMT400061143	Potato	plastid	20.89	15.27
PGSC0003DMT400061517	Potato	mitochondrion	19.84	10.17

Protein Annotations

EntrezGene:102588147	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
UniProt:M0ZI06	PFAM:PF11891	EnsemblPlantsGene:PGSC0003DMG400000435	PGSC:PGSC0003DMG400000435	EnsemblPlants:PGSC0003DMT400001155	PANTHER:PTHR31038
PANTHER:PTHR31038:SF9	InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI000295F494	RefSeq:XP_006349070.1	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000435]

Coordinates

chr11:+:39620402..39627162

Molecular Weight (calculated)

41573.4 Da

IEP (calculated)

8.720

GRAVY (calculated)

0.094

Length

383 amino acids

Sequence
(BLAST)

001: MALFQSSLSH ISILSISSNN TQIPQFKCLN LSKFVSLQQS ITKTDRIFRI TCTGQESIVR TVDGGDGGNG KGGFPSDNNG GGDDGDGGGG FDEKEFGPIV
101: KFDEVVKEAE KLGAKLPIDM LEAAKTTGIR RLILSRYLDM QGSAWPLGFL MRHCSMLRNR MLADPSFLFK VGTEIVIDSC CATFAEVQKR GKDFWAEFEL
201: YAADLLVGIV VDIALVGMLA PYVRIGKQSI SSSSFGRFRH ACGALPSSVF EAERPGCKFT LQQRISTFFY KGFLYGSVGF GCGLVGQGIA NLIMTAKRSI
301: KKSEEDIPVP PLIGSAALWG FFLAVSSNTR YQIINGLERL VEASPVAKRV PPVAMAFTVG VRFANNIYGG MQFVEWAKLS GVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.