Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g087750.2.1 | Tomato | nucleus, plastid | 97.11 | 97.11 |
| VIT_13s0064g00160.t01 | Wine grape | plastid | 63.42 | 63.42 |
| VIT_06s0004g02400.t01 | Wine grape | plastid | 61.84 | 61.2 |
| KRH23903 | Soybean | nucleus, plastid | 59.74 | 61.02 |
| KRH39906 | Soybean | mitochondrion, plastid | 60.26 | 60.9 |
| PGSC0003DMT400082409 | Potato | plastid | 58.68 | 54.26 |
| KRG88973 | Soybean | plastid | 53.68 | 51.91 |
| PGSC0003DMT400071250 | Potato | plastid | 24.74 | 25.82 |
| PGSC0003DMT400016786 | Potato | plastid | 23.68 | 25.35 |
| PGSC0003DMT400001155 | Potato | plastid | 24.74 | 24.54 |
| PGSC0003DMT400062339 | Potato | mitochondrion | 23.42 | 20.7 |
| PGSC0003DMT400061517 | Potato | mitochondrion | 33.16 | 16.87 |
| PGSC0003DMT400061143 | Potato | plastid | 22.37 | 16.22 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017452 | EnsemblPlantsGene:PGSC0003DMG400006782 | EntrezGene:102602697 | InterPro:RETICULATA-related | ncoils:Coil | PANTHER:PTHR31620 |
| PANTHER:PTHR31620:SF8 | PFAM:PF11891 | PGSC:PGSC0003DMG400006782 | RefSeq:XP_006345403.1 | SEG:seg | UniParc:UPI000296B6F2 |
| UniProt:M1A8Y5 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006782]
Coordinates
chr1:+:65062288..65066823
Molecular Weight (calculated)
40853.2 Da
IEP (calculated)
9.357
GRAVY (calculated)
0.110
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIATATAT SYLSTTSLSR HQSSTFRFSS LTYPINFSTF SLNAQFNPPR TSFPIFSTLS NHHGGGNIDG GGGGGGGSGG DGRGKDDGNA GERNKKEAIM
101: ALAEAERTLD SLPKDLASAI EAGKIPPAVI HRFLELEKSP VLRWLLSFGG FRERLLADDL FLTKVAIECG IGIFTKSAAE LEKRRENFTK ELDFVCADVV
201: MAIVADFMLV WLPAPTVGLR PSLAIGSGPL TKLFYNCPDN AFQVVLSGTS YSFLQRLGAI VRNGAKLFAV GSGASLVGTG VTNTLINARK AIDKTFAGEA
301: ENLPVLSSSA AYGVYMAFSS NLRYQILAGV IEQRILEPLL HKNKIMLGAL CFVFRTGNTF LGSLMWVDFA RWIGIQRSRE
101: ALAEAERTLD SLPKDLASAI EAGKIPPAVI HRFLELEKSP VLRWLLSFGG FRERLLADDL FLTKVAIECG IGIFTKSAAE LEKRRENFTK ELDFVCADVV
201: MAIVADFMLV WLPAPTVGLR PSLAIGSGPL TKLFYNCPDN AFQVVLSGTS YSFLQRLGAI VRNGAKLFAV GSGASLVGTG VTNTLINARK AIDKTFAGEA
301: ENLPVLSSSA AYGVYMAFSS NLRYQILAGV IEQRILEPLL HKNKIMLGAL CFVFRTGNTF LGSLMWVDFA RWIGIQRSRE
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.