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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 9
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:nucleus, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH23903 Soybean nucleus, plastid 97.34 98.39
VIT_13s0064g00160.t01 Wine grape plastid 72.07 71.32
VIT_06s0004g02400.t01 Wine grape plastid 69.15 67.71
KRH24069 Soybean endoplasmic reticulum, mitochondrion 63.83 65.93
KRH29040 Soybean endoplasmic reticulum 63.3 64.67
Solyc01g087750.2.1 Tomato nucleus, plastid 62.23 61.58
KRG88973 Soybean plastid 64.1 61.32
PGSC0003DMT400017452 Potato plastid 60.9 60.26
KRH26562 Soybean plastid 26.6 26.04
KRH09563 Soybean plastid 22.07 25.94
KRH00511 Soybean endoplasmic reticulum 23.67 25.65
KRH40643 Soybean mitochondrion 23.67 25.5
KRH22744 Soybean plastid 25.8 25.13
KRH00055 Soybean plastid 27.13 22.92
KRH49190 Soybean endoplasmic reticulum 25.8 21.9
KRH33749 Soybean plastid 13.3 17.54
KRG97671 Soybean plastid 32.71 16.47
KRH31203 Soybean plastid 32.71 16.44
KRH44019 Soybean mitochondrion, nucleus, plastid 20.74 15.03
KRH10440 Soybean endoplasmic reticulum, nucleus, plastid 20.21 14.53
Protein Annotations
EMBL:ACUP02006011EnsemblPlants:KRH39906EnsemblPlantsGene:GLYMA_09G227100EntrezGene:100808020InterPro:RETICULATA-relatedncoils:Coil
PANTHER:PTHR31620PANTHER:PTHR31620:SF8PFAM:PF11891ProteinID:KRH39906ProteinID:KRH39906.1SEG:seg
UniParc:UPI000233819AUniProt:I1L5L0MapMan:35.1:::
Description
hypothetical protein
Coordinates
chr9:-:45159637..45163303
Molecular Weight (calculated)
40162.6 Da
IEP (calculated)
9.156
GRAVY (calculated)
0.199
Length
376 amino acids
Sequence
(BLAST)
001: MAVPSFSARS FSLPAQNHYC HLSSLPLPSF TLSSRRPRYS SSNLFTPLRS PTTPIFASAH GGGTGGGHAG GGGAGGGGGG DHESEDRDRN REEALLVLAE
101: AGRPLEKLPA DLAAAIGAGR VPGSIVKRLF ELEKSAVFRW LLNFGGFRER LLADDLFLAK VAMECGVGIF TKTAAELEKR KENFTKELDF VCADVVMAIV
201: ADFMLVWLPA PTVSLRPPLA VSAGTIAKFF YGCPENAFQV ALAGTSYSLI QRIGAIVRNG AKLFAVGTGA SLIGTGVTNA LINARKVVDK SFAAEAEDVP
301: IISTSIAYGV YMAVSSNLRY QVLAGVIEQR ILEPLLHQHK LMLSAICFAV RTGNTFLGSL LWVDYARWVG VQKIRD
Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.