CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39906	Soybean	mitochondrion, plastid	98.39	97.34
VIT_13s0064g00160.t01	Wine grape	plastid	73.12	71.58
VIT_06s0004g02400.t01	Wine grape	plastid	69.35	67.19
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	63.44	64.84
KRH29040	Soybean	endoplasmic reticulum	63.17	63.86
Solyc01g087750.2.1	Tomato	nucleus, plastid	62.37	61.05
KRG88973	Soybean	plastid	64.25	60.81
PGSC0003DMT400017452	Potato	plastid	61.02	59.74
KRH26562	Soybean	plastid	26.61	25.78
KRH09563	Soybean	plastid	22.04	25.62
KRH00511	Soybean	endoplasmic reticulum	23.39	25.07
KRH40643	Soybean	mitochondrion	23.39	24.93
KRH22744	Soybean	plastid	25.81	24.87
KRH00055	Soybean	plastid	27.42	22.92
KRH49190	Soybean	endoplasmic reticulum	26.08	21.9
KRH33749	Soybean	plastid	13.44	17.54
KRG97671	Soybean	plastid	32.53	16.2
KRH31203	Soybean	plastid	32.26	16.04
KRH44019	Soybean	mitochondrion, nucleus, plastid	20.43	14.64
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	19.89	14.15

Protein Annotations

EMBL:ACUP02007161	EnsemblPlants:KRH23903	EnsemblPlantsGene:GLYMA_12G009700	EntrezGene:100818590	InterPro:RETICULATA-related	ncoils:Coil
PANTHER:PTHR31620	PANTHER:PTHR31620:SF8	PFAM:PF11891	ProteinID:KRH23903	ProteinID:KRH23903.1	SEG:seg
UniParc:UPI0001B63D46	UniProt:A0A0R0HCH3	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:701326..705230

Molecular Weight (calculated)

39818.2 Da

IEP (calculated)

8.944

GRAVY (calculated)

0.196

Length

372 amino acids

Sequence
(BLAST)

001: MAVPSFSARS FSLPAQNHYC HLSSLPLPSF TLSSRRPRHS SSNLFTPLRS PTTPIFASAP GGGTGGGHAG GGGGGGDGES EDRDRNREEA LLVLAEAGRP
101: LEKLPADLAA AVEAGRVPGS IVKRLFELEK SAVFRWLLNF GGFRERLLAD DLFLAKVAME CGVGIFTKTA AELEKRKENF TKELDFVCAD VVMAIVADFM
201: LVWLPAPTVS LRPPLAVSAG TIAKFFYGCP ENAFQVALAG TSYSLIQRIG AIVRNGAKLF AVGTGASLIG TGVTNALINA RKVVDKSFAA EAEDVPIIST
301: SIAYGVYMAV SSNLRYQVLA GVIEQRILEP LLHQHKLMLS AVCFAVRTGN TFLGSLLWVD YARWVGVQKI RD

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.