CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 8
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	95.76	95.03
VIT_12s0034g01330.t01	Wine grape	cytosol	31.02	77.03
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	61.66	73.06
VIT_12s0034g01370.t01	Wine grape	plastid	72.45	72.17
Solyc01g104270.2.1	Tomato	plastid	68.98	68.32
PGSC0003DMT400061143	Potato	plastid	68.98	68.32
Solyc10g045620.1.1	Tomato	cytosol	43.93	67.26
CDX80466	Canola	plastid	68.02	66.98
AT5G24690.1	Thale cress	plastid	67.05	66.79
Bra009789.1-P	Field mustard	plastid	67.82	66.54
Bra036522.1-P	Field mustard	plastid	66.67	66.54
CDX87117	Canola	plastid	67.24	66.35
Zm00001d041036_P001	Maize	cytosol	42.97	64.83
Os12t0283800-01	Rice	extracellular, plastid	29.29	64.41
HORVU7Hr1G082560.2	Barley	mitochondrion	49.52	61.34
Solyc10g045630.1.1	Tomato	plastid	29.67	58.78
EES16982	Sorghum	plastid	58.19	56.13
TraesCS5A01G110400.1	Wheat	plastid	57.42	55.91
TraesCS5B01G110100.1	Wheat	golgi	57.23	55.83
TraesCS5D01G123000.1	Wheat	plastid	57.23	55.62
Zm00001d023791_P002	Maize	plasma membrane	56.45	54.56
TraesCS7A01G335500.1	Wheat	plastid	51.83	54.34
HORVU5Hr1G030040.1	Barley	plastid	56.84	53.83
TraesCS7D01G343200.1	Wheat	plastid	51.64	53.82
TraesCS7B01G247100.1	Wheat	plastid	51.64	53.82
KRH29040	Soybean	endoplasmic reticulum	14.84	20.92
KRH39906	Soybean	mitochondrion, plastid	15.03	20.74
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	14.45	20.6
CDX88129	Canola	cytosol	68.21	20.46
KRH23903	Soybean	nucleus, plastid	14.64	20.43
KRH40643	Soybean	mitochondrion	13.68	20.34
KRH26562	Soybean	plastid	14.84	20.05
KRH09563	Soybean	plastid	12.33	20.0
KRH00511	Soybean	endoplasmic reticulum	13.1	19.6
KRG88973	Soybean	plastid	14.45	19.08
KRH22744	Soybean	plastid	14.07	18.91
Os05t0474600-02	Rice	cytosol	15.8	18.89
KRH49190	Soybean	endoplasmic reticulum	15.41	18.06
KRH00055	Soybean	plastid	15.22	17.75
KRG97671	Soybean	plastid	19.85	13.79
KRH31203	Soybean	plastid	19.85	13.77
KRH33749	Soybean	plastid	6.36	11.58
Os05t0474500-01	Rice	cytosol	0.39	0.39

Protein Annotations

EMBL:ACUP02004907	EnsemblPlants:KRH44019	EnsemblPlantsGene:GLYMA_08G185500	EntrezGene:100805854	InterPro:RETICULATA-related	PANTHER:PTHR31038
PANTHER:PTHR31038:SF2	PFAM:PF11891	ProteinID:KRH44019	ProteinID:KRH44019.1	SEG:seg	UniParc:UPI000233885D
UniProt:I1KUK8	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:14863631..14867077

Molecular Weight (calculated)

57200.6 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.183

Length

519 amino acids

Sequence
(BLAST)

001: MLPALSQFKV NHVGVGFNSS PNPIPMLPAL RRSRCVVLFR LRSYSSTDFK ITAHVETDST VHLERCFNAP VASHLPSISM KGGQYGAFGA VTLEKSKLDM
101: SQKQTRSSPE LDIGGGGGDI GKKINHGGGD GGDDDGDDDD YFDDFDDGDE GDEGGLFRRR ILFEELFDRK FVDAVLNEWQ KTMMDLPAGL RQAYEMGLVS
201: SAQMVKFLAI NARPTTSRFI SRTLPQALSR SFIGRLLADP AFLYRFLLEE AATVGCSLWW EIKTRKDRIK QEWDLALMNV MTAAACNALV VWSLAPCRSY
301: GNTFRFDLQN TLQKLPNNIF EKSYPLREFD LQKRIQCFLF KAAELCMVGL SAGAVQGALS NSLASKKEGR LSVTVPSVSS NALGYGAFLG IYANLRYQLL
401: CGFDRAMMTH FDVIGVALFF STAFRVLNVQ LGETSKRAWL GVEADPLAQS DDLLKVYNRT SENVEKSSSK WFISKNAVVS GLGLLGIKQR NADGSGSESS
501: APKSRRKRIV RKKVAAGSA

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.