CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	94.02	95.05
Bra008880.1-P	Field mustard	cytosol	60.33	79.0
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	43.21	74.3
HORVU0Hr1G000510.2	Barley	cytosol	41.85	67.54
CDX97204	Canola	plastid	65.76	64.71
CDY53965	Canola	plastid	66.3	64.38
CDX70479	Canola	plastid	65.49	64.27
CDX78491	Canola	plastid	64.95	63.56
AT5G12470.1	Thale cress	plastid	66.58	63.47
KRH39906	Soybean	mitochondrion, plastid	64.67	63.3
Bra006164.1-P	Field mustard	plastid	64.95	63.23
KRH23903	Soybean	nucleus, plastid	63.86	63.17
GSMUA_Achr8P08530_001	Banana	plastid	63.86	62.5
Zm00001d038085_P001	Maize	plastid	62.23	59.17
TraesCS1B01G254100.1	Wheat	unclear	61.41	59.16
Os05t0388600-01	Rice	plasma membrane	60.6	58.99
TraesCS1D01G242600.1	Wheat	golgi	61.41	58.85
TraesCS1A01G242600.1	Wheat	plastid	61.14	58.59
Os01t0957200-01	Rice	plastid	61.14	57.84
PGSC0003DMT400082409	Potato	plastid	62.77	56.2
Solyc11g065490.1.1	Tomato	plastid	62.5	55.69
EES18163	Sorghum	plastid	62.23	55.45
HORVU3Hr1G109880.1	Barley	plastid	57.61	54.5
KRG88973	Soybean	plastid	55.16	51.65
Zm00001d042050_P001	Maize	plastid	56.79	50.36
KXG34151	Sorghum	plastid	54.62	48.09
KRH09563	Soybean	plastid	22.55	25.94
KRH26562	Soybean	plastid	26.9	25.78
KRH22744	Soybean	plastid	25.82	24.61
KRH00511	Soybean	endoplasmic reticulum	22.55	23.92
KRH40643	Soybean	mitochondrion	22.55	23.78
KRH00055	Soybean	plastid	27.17	22.47
KRH49190	Soybean	endoplasmic reticulum	25.82	21.44
KRG97671	Soybean	plastid	32.88	16.2
KRH31203	Soybean	plastid	32.61	16.04
KRH33749	Soybean	plastid	11.96	15.44
KRH44019	Soybean	mitochondrion, nucleus, plastid	20.92	14.84
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	20.38	14.34

Protein Annotations

EMBL:ACUP02006777	EnsemblPlants:KRH29040	EnsemblPlantsGene:GLYMA_11G093500	EntrezGene:100796187	InterPro:RETICULATA-related	PANTHER:PTHR31620
PANTHER:PTHR31620:SF11	PFAM:PF11891	ProteinID:KRH29040	ProteinID:KRH29040.1	SEG:seg	UniParc:UPI000233D70E
UniProt:I1LIJ9	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:7090194..7094061

Molecular Weight (calculated)

39384.6 Da

IEP (calculated)

9.474

GRAVY (calculated)

0.171

Length

368 amino acids

Sequence
(BLAST)

001: MSIAFSFFTP LSSSSKSIPS FSLSTPTPPL RFRLTPLRRP TDRFYPLRSS TGVPDGGSFG GHGGHGHGGH GGHGGGGGHD NEDNGRKNEA LLVVAEAGRS
101: LESVPADLAA AIKAGKIPAS VVTRFLELEK SPFFRWLLQF AGFRERLLAD DLFLAKVAME CGVGVFTKTA AEYEKRKENF FNEIEIVFAD VAMAIIADFM
201: LVYLPAPTVA LRPPLALTAG PVAKFFHGCP DNAFQVALSG ASYSLIQRVG AIVRNGAKLF AVGTASSLVG TAMTNAFINA KKAVNKTSEG EIENVPVLST
301: SAAYGVYMAV SSNLRYQVLA GIIEQRLLEP LLHQHKLILS ALCFAVRTGN TYLGSLLWVD YARFVGVQ

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.