Factsheet for TraesCS1D01G242600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G254100.1	Wheat	unclear	97.66	98.17
TraesCS1A01G242600.1	Wheat	plastid	97.14	97.14
HORVU0Hr1G000510.2	Barley	cytosol	53.39	89.91
Os05t0388600-01	Rice	plasma membrane	81.25	82.54
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	45.57	81.78
Zm00001d038085_P001	Maize	plastid	79.43	78.81
EES18163	Sorghum	plastid	79.69	74.09
Bra008880.1-P	Field mustard	cytosol	53.91	73.67
GSMUA_Achr8P08530_001	Banana	plastid	66.15	67.55
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	59.9	63.19
KRH29040	Soybean	endoplasmic reticulum	58.85	61.41
CDX70479	Canola	plastid	59.9	61.33
CDX97204	Canola	plastid	59.38	60.96
CDX78491	Canola	plastid	59.64	60.9
AT5G12470.1	Thale cress	plastid	61.2	60.88
Bra006164.1-P	Field mustard	plastid	59.64	60.58
CDY53965	Canola	plastid	59.64	60.42
PGSC0003DMT400082409	Potato	plastid	61.2	57.18
Solyc11g065490.1.1	Tomato	plastid	60.68	56.42
TraesCS2D01G374200.1	Wheat	plastid	26.82	26.21
TraesCS2D01G241700.1	Wheat	golgi, unclear	24.22	21.73
TraesCS3D01G330200.1	Wheat	plastid	20.05	21.69
TraesCS3D01G341400.1	Wheat	plastid	31.77	16.94
TraesCS7D01G343200.1	Wheat	plastid	21.61	16.67
TraesCS1D01G293100.1	Wheat	plastid	31.77	16.55
TraesCS5D01G123000.1	Wheat	plastid	20.31	14.61

Protein Annotations

EnsemblPlants:TraesCS1D01G242600.1	EnsemblPlantsGene:TraesCS1D01G242600	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8	PFAM:PF11891
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:332952795..332957816

Molecular Weight (calculated)

41151.8 Da

IEP (calculated)

6.797

GRAVY (calculated)

0.142

Length

384 amino acids

Sequence
(BLAST)

001: MAFSTPNALS ASGPASPFHL RLQPQPFLRL PALPFHRSLP LHLPSLRLTR PLLPPLPLAS SGGGSNIGSG GGGGGGDDDL PSGGGGDEDE DEGEGSDDAA
101: VNRREALFVL AQLGRKLESL PADMAAAVEG GRLPGEIVRR FADLEKSPMF RWLLQFGGFR ERLLADDLFL AKVAMECGVG IFTKTAAEYE RRRENFVKEL
201: DFVIADVVMA IVADFMLVWL PAPTVSLQPA LSVNAGAIAK FFHNCPDNAF QVALAGRSYT FLQRLGAIMR NGAKLFAVGT SASLIGTGVT NAIIKARKTV
301: NKDDAGEVED IPIVSTSIAY GVYMAVSSNL RYQVLAGVIE QRMLEPLLHR HKLALSALCF AVRTGNTFLG SLLWVDYAKF IGIQ

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.