Factsheet for Bra008880.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	58.36	76.64
CDX97204	Canola	plastid	99.29	74.6
CDY53965	Canola	plastid	100.0	74.14
Bra006164.1-P	Field mustard	plastid	97.51	72.49
HORVU0Hr1G000510.2	Barley	cytosol	57.65	71.05
AT5G12470.1	Thale cress	plastid	90.75	66.06
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	79.36	61.26
KRH29040	Soybean	endoplasmic reticulum	79.0	60.33
Os05t0388600-01	Rice	plasma membrane	75.8	56.35
GSMUA_Achr8P08530_001	Banana	plastid	74.73	55.85
TraesCS1B01G254100.1	Wheat	unclear	74.02	54.45
TraesCS1A01G242600.1	Wheat	plastid	74.02	54.17
Zm00001d038085_P001	Maize	plastid	74.38	54.01
TraesCS1D01G242600.1	Wheat	golgi	73.67	53.91
Os01t0957200-01	Rice	plastid	73.67	53.21
PGSC0003DMT400082409	Potato	plastid	77.58	53.04
Solyc11g065490.1.1	Tomato	plastid	77.22	52.54
HORVU3Hr1G109880.1	Barley	plastid	70.11	50.64
EES18163	Sorghum	plastid	74.02	50.36
Zm00001d042050_P001	Maize	plastid	67.97	46.02
KXG34151	Sorghum	plastid	63.35	42.58
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	27.4	31.3
Bra029704.1-P	Field mustard	plastid	27.05	23.68
Bra002429.1-P	Field mustard	plastid	29.18	19.52
Bra005154.1-P	Field mustard	plastid	29.18	19.39
Bra000024.1-P	Field mustard	plastid	29.18	19.25
Bra006636.1-P	Field mustard	plastid	28.83	13.8
Bra003229.1-P	Field mustard	plastid	33.81	12.82
Bra017008.1-P	Field mustard	plastid	33.81	12.79
Bra036522.1-P	Field mustard	plastid	21.71	11.73
Bra009789.1-P	Field mustard	plastid	21.71	11.53

Protein Annotations

EnsemblPlants:Bra008880.1	EnsemblPlants:Bra008880.1-P	EnsemblPlantsGene:Bra008880	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11
PFAM:PF11891	SEG:seg	UniParc:UPI0002543D29	UniProt:M4CXD3	MapMan:35.1	:

Description

AT5G12470 (E=1e-130) | unknown protein

Coordinates

chrA10:+:14256936..14258824

Molecular Weight (calculated)

30596.4 Da

IEP (calculated)

8.062

GRAVY (calculated)

0.360

Length

281 amino acids

Sequence
(BLAST)

001: MMLLAESGTE LESLPKDLAA AIESGRIPGS VITRFLELQR SAVMRWLMQF AGFRERLLAD DLFLAKLAME CGVGVFTKTA AEYERRRENF FNELEVVFAD
101: VVMAIIADFM LVYLPAPTVS LRPPLALSAG GLSKFFHNCP DNAFQIAISG TSYSLLQRFG AIARNGAKLF AVGTTSSLVG TAVTNAFIKA KGAVDKTSEG
201: EVETVPIVST SVAYGVYMAV SSNLRYQVLA GVVEQRLLEP LLHQHKLALS AMCFAVRTGN TFLGSLLWVD YARLIGIQKS H

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.