Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
21433289
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P00440_001 | Banana | cytosol, plasma membrane, plastid | 45.24 | 82.24 |
| HORVU3Hr1G109880.1 | Barley | plastid | 75.32 | 75.32 |
| Os05t0388600-01 | Rice | plasma membrane | 71.72 | 73.81 |
| Bra008880.1-P | Field mustard | cytosol | 53.21 | 73.67 |
| GSMUA_Achr8P08530_001 | Banana | plastid | 64.78 | 67.02 |
| Zm00001d042050_P001 | Maize | plastid | 68.89 | 64.58 |
| CDX97204 | Canola | plastid | 60.41 | 62.83 |
| CDX70479 | Canola | plastid | 59.64 | 61.87 |
| CDY53965 | Canola | plastid | 60.15 | 61.74 |
| CDX78491 | Canola | plastid | 59.64 | 61.7 |
| Bra006164.1-P | Field mustard | plastid | 59.64 | 61.38 |
| KRH24069 | Soybean | endoplasmic reticulum, mitochondrion | 57.33 | 61.26 |
| KRH29040 | Soybean | endoplasmic reticulum | 57.84 | 61.14 |
| KXG34151 | Sorghum | plastid | 64.78 | 60.29 |
| AT5G12470.1 | Thale cress | plastid | 59.38 | 59.84 |
| PGSC0003DMT400082409 | Potato | plastid | 58.87 | 55.72 |
| Solyc11g065490.1.1 | Tomato | plastid | 58.61 | 55.21 |
| Os01t0812900-01 | Rice | plastid | 24.16 | 27.01 |
| Os04t0524400-01 | Rice | plastid | 26.22 | 25.56 |
| Os05t0474600-02 | Rice | cytosol | 28.28 | 25.35 |
| Os07t0240300-01 | Rice | plastid | 23.65 | 20.77 |
| Os12t0283800-01 | Rice | extracellular, plastid | 11.05 | 18.22 |
| Os01t0826900-01 | Rice | cytosol, endoplasmic reticulum, plastid | 32.9 | 17.14 |
| Os03t0390900-01 | Rice | plastid | 9.0 | 16.83 |
| Os05t0474500-01 | Rice | cytosol | 0.26 | 0.2 |
Protein Annotations
| EnsemblPlants:Os01t0957200-01 | EnsemblPlantsGene:Os01g0957200 | EntrezGene:4325382 | InterPro:RETICULATA-related | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF7 |
| PFAM:PF11891 | ProteinID:BAD88146.1 | ProteinID:BAF07360.1 | ProteinID:BAS76295.1 | ProteinID:EEE56032.1 | RefSeq:XP_015627756.1 |
| SEG:seg | UniParc:UPI00004C2BAA | UniProt:Q5JK51 | MapMan:35.1 | : | : |
Description
Protein of unknown function DUF3411 domain containing protein. (Os01t0957200-01)
Coordinates
chr1:+:42190489..42193879
Molecular Weight (calculated)
42132.9 Da
IEP (calculated)
7.663
GRAVY (calculated)
0.045
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFHYAAMPS SSSSSLSGVS SQPPLHLPRL RSPHQASRRL SALPFSRALP LPLRLRLRIP RPQLPPLPLA FSHGGGGDND GDDNNNNGGG DGEGDGGAPD
101: NRREALFVLA QLGRKLESLP SDLAAAVEGG RVTGEIVRRF AEMEGSALLR WLLQFQGFRE RLLADDLFLA KLAMECGVGV IAKTAAEYEK RRENFVKEID
201: IVIADVVMAI VADFMLVYLP APTVSLQPPL ATNAGHIANF FHNCPDNAFQ IALAGRSYSI LQRLGAILRN GAKLFTVGTS ASLIGTGVTN ALIKARKAVD
301: KELDDEVEDI PVLSTSVAYG VYMAVSSNLR YQILAGVIEQ RMLEPLLHNH KLLLSALCFA VRTGNTFLGS LLWVDYARWV GVQKVQEEA
101: NRREALFVLA QLGRKLESLP SDLAAAVEGG RVTGEIVRRF AEMEGSALLR WLLQFQGFRE RLLADDLFLA KLAMECGVGV IAKTAAEYEK RRENFVKEID
201: IVIADVVMAI VADFMLVYLP APTVSLQPPL ATNAGHIANF FHNCPDNAFQ IALAGRSYSI LQRLGAILRN GAKLFTVGTS ASLIGTGVTN ALIKARKAVD
301: KELDDEVEDI PVLSTSVAYG VYMAVSSNLR YQILAGVIEQ RMLEPLLHNH KLLLSALCFA VRTGNTFLGS LLWVDYARWV GVQKVQEEA
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.