Factsheet for Os04t0524400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	17.04	91.89
EES11134	Sorghum	plastid	84.71	85.14
TraesCS2D01G374200.1	Wheat	plastid	81.95	83.21
TraesCS2B01G394800.1	Wheat	golgi, plastid	81.95	83.21
TraesCS2A01G377800.1	Wheat	plastid	80.95	82.4
HORVU2Hr1G090260.1	Barley	plastid	81.7	79.9
Zm00001d002980_P001	Maize	plastid	77.94	77.75
Os03t0390900-01	Rice	plastid	34.34	65.87
PGSC0003DMT400062339	Potato	mitochondrion	61.65	57.21
Solyc09g011340.2.1	Tomato	plastid	61.15	57.01
Os07t0240300-01	Rice	plastid	60.4	54.4
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	65.66	39.58
Os05t0388600-01	Rice	plasma membrane	25.81	27.25
Os01t0957200-01	Rice	plastid	25.56	26.22
Os01t0812900-01	Rice	plastid	21.05	24.14
Os05t0474600-02	Rice	cytosol	20.8	19.12
Os12t0283800-01	Rice	extracellular, plastid	10.78	18.22
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	24.31	12.99
Os05t0474500-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	EntrezGene:4336440	UniProt:A0A0P0WCK1	ProteinID:BAS90149.1	GO:GO:0000160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:Os04g0524400	EnsemblPlants:Os04t0524400-01	PFAM:PF11891	PANTHER:PTHR31038
PANTHER:PTHR31038:SF8	InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI000393A382	RefSeq:XP_015636360.1	SEG:seg

Description

Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein. (Os04t0524400-01)

Coordinates

chr4:+:26232855..26236777

Molecular Weight (calculated)

41705.7 Da

IEP (calculated)

7.097

GRAVY (calculated)

0.110

Length

399 amino acids

Sequence
(BLAST)

001: MAFAASPSLS SLAAASSSSS AASAAAVAIS SSSSSPSNPS RELSPRLFSP LPPKPHSLSC SGTQAPRATT GDGSGAAGDR GSGSGGNSGK GGGGGSGSGG
101: GDDDDDYEEA EFGPLLGFDE VLRLAAARGV SLPADMMEAA KDAGIREVLL LRYFDLQAGP WPLAAMIRAF SMLRNRMLAD PSFLFKVGTE VVIDSCCATF
201: AEVQKRGEDF WAEFELYAAD LLVGVVVDIA LVGLLAPYVR FGKASASTGP FGRFNRMAGS LPSSVFEAER PGCRFTVQQR IGTFFYKGVL YGSVGFVCGI
301: IGQGIANMIM TAKRSVKKSD EDIPVPPLIK SAALWGVFLA VSSNTRYQII NGLERVVETS PIAKRVPPVA MAFTVGVRFA NNIYGGMQFV DWARWSGVQ

Best Arabidopsis Sequence Match ( AT5G22790.1 )
(BLAST)

001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ

Arabidopsis Description

RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.