Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0524400-01 | Rice | plastid | 65.87 | 34.34 |
| EES11134 | Sorghum | plastid | 61.06 | 31.99 |
| TraesCS2A01G377800.1 | Wheat | plastid | 59.13 | 31.38 |
| TraesCS2D01G374200.1 | Wheat | plastid | 59.13 | 31.3 |
| TraesCS2B01G394800.1 | Wheat | golgi, plastid | 59.13 | 31.3 |
| HORVU2Hr1G090260.1 | Barley | plastid | 60.1 | 30.64 |
| Zm00001d002980_P001 | Maize | plastid | 50.96 | 26.5 |
| PGSC0003DMT400062339 | Potato | mitochondrion | 42.79 | 20.7 |
| Solyc09g011340.2.1 | Tomato | plastid | 41.83 | 20.33 |
| Os07t0240300-01 | Rice | plastid | 42.79 | 20.09 |
| GSMUA_Achr8P13730_001 | Banana | extracellular, plasma membrane | 40.87 | 12.84 |
| Os05t0388600-01 | Rice | plasma membrane | 18.27 | 10.05 |
| Os01t0957200-01 | Rice | plastid | 16.83 | 9.0 |
| Os01t0812900-01 | Rice | plastid | 10.1 | 6.03 |
| Os05t0474600-02 | Rice | cytosol | 12.5 | 5.99 |
| Os01t0826900-01 | Rice | cytosol, endoplasmic reticulum, plastid | 17.79 | 4.95 |
| Os12t0283800-01 | Rice | extracellular, plastid | 0.0 | 0.0 |
| Os05t0474500-01 | Rice | cytosol | 0.0 | 0.0 |
| OQU75601 | Sorghum | cytosol, mitochondrion, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os03t0390900-01 | EnsemblPlantsGene:Os03g0390900 | InterPro:RETICULATA-related | PANTHER:PTHR31038 | PANTHER:PTHR31038:SF8 | PFAM:PF11891 |
| ProteinID:BAS84520.1 | SEG:seg | UniParc:UPI000393B306 | UniProt:A0A0P0VZ23 | MapMan:35.1 | : |
Description
Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein. (Os03t0390900-01)
Coordinates
chr3:-:15658869..15661383
Molecular Weight (calculated)
22232.2 Da
IEP (calculated)
5.269
GRAVY (calculated)
-0.206
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: RHAPSPLLSR LRRLPSLASA VAAAVISSSS PSNPSHELRP LHQLSSRLFS PLPPKPHSLS CSRPQAPRAT TTDGSGAGDH GSDSGGNSGK GSGGGGGSDD
101: DDCEEAEFGP LLRFDEVLRL AMARGVSLPA DMEAAKDAGI WEVLLLRYFD LQAAPWPLAA MIRAFSMLHN RMLADPSFLF KVGTEVVIDS RCATFAEDFW
201: AEFELYDP
101: DDCEEAEFGP LLRFDEVLRL AMARGVSLPA DMEAAKDAGI WEVLLLRYFD LQAAPWPLAA MIRAFSMLHN RMLADPSFLF KVGTEVVIDS RCATFAEDFW
201: AEFELYDP
001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
Arabidopsis Description
RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.