Factsheet for TraesCS2B01G394800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G374200.1	Wheat	plastid	97.71	97.71
TraesCS2A01G377800.1	Wheat	plastid	96.44	96.68
HORVU2Hr1G090260.1	Barley	plastid	94.4	90.93
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	16.79	89.19
Os04t0524400-01	Rice	plastid	83.21	81.95
EES11134	Sorghum	plastid	81.93	81.11
Zm00001d002980_P001	Maize	plastid	76.34	75.0
Os03t0390900-01	Rice	plastid	31.3	59.13
PGSC0003DMT400062339	Potato	mitochondrion	61.32	56.05
Solyc09g011340.2.1	Tomato	plastid	60.81	55.84
TraesCS2B01G261500.1	Wheat	golgi, unclear	55.47	50.93
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	64.89	38.52
TraesCS1B01G254100.1	Wheat	unclear	25.95	26.7
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	19.85	22.35
TraesCS5B01G110100.1	Wheat	golgi	22.65	16.73
TraesCS7B01G247100.1	Wheat	plastid	21.12	16.67
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	25.95	14.15
TraesCS1B01G307600.1	Wheat	plastid	25.19	13.45

Protein Annotations

EnsemblPlants:TraesCS2B01G394800.1	EnsemblPlantsGene:TraesCS2B01G394800	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF8	PFAM:PF11891
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2B:-:559427770..559430566

Molecular Weight (calculated)

41368.8 Da

IEP (calculated)

7.726

GRAVY (calculated)

0.149

Length

393 amino acids

Sequence
(BLAST)

001: MASASASLSS LASSAAAAAA ISSSPGCPPS KPFHDPKPLH LSVRLFSRFA KPQSLSCSGP HVPRAATGDG SGAGNRGGDS GGNGGKDGGG NDGDGGGEDD
101: YEEAEFGPLL GFSEVVRLAT ARGVTLPADM IEAAKDAGIR EVILLRYFDL QAAPWPLAAM IRAFSVLRNR MLADPSFLFK VGIEVVIDSC CATLAEVQKR
201: GEDFWAEFEL YAADILIGIV VDIALVGMLA PYVRLGKASS STGLLGRFNR MAGALPSSVF EAERPGCRFT VQQRIGTYFY KGVLYGSVGF VCGIIGQGIC
301: NMIMNAKRSV KKTDEDIPVP PLIKSAALWG VFLAVSSNTR YQIINGLERV VEASPVAKGA PPVAMAFTVG VRFANNIYGG MQFIDWARWS GVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.